RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 PLAC8L1A1L4L8 177 aa9.72□□□□□ -0.85
SQSTM1-208ENST00000485412 ZNF98A6NK75 572 aa9.72□□□□□ -0.85
SQSTM1-208ENST00000485412 AZU1P20160 251 aa9.72□□□□□ -0.85
SQSTM1-208ENST00000485412 CNN1P51911 297 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-208ENST00000485412 OR11H7Q8NGC8 314 aa9.72□□□□□ -0.85
SQSTM1-208ENST00000485412 IGF2BP2-AS1Q96M15 143 aa9.72□□□□□ -0.85
SQSTM1-208ENST00000485412 RPRMQ9NS64 109 aa9.72□□□□□ -0.85
SQSTM1-208ENST00000485412 SPATA31B1PQ5VZV4 182 aa9.71□□□□□ -0.86
SQSTM1-208ENST00000485412 TMED4Q7Z7H5 227 aa9.71□□□□□ -0.86
SQSTM1-208ENST00000485412 SOSTQ9BQB4 213 aa9.71□□□□□ -0.86
SQSTM1-208ENST00000485412 SLC25A39Q9BZJ4 359 aaPredicted RBP9.71□□□□□ -0.86
SQSTM1-208ENST00000485412 CACFD1Q9UGQ2 172 aa9.71□□□□□ -0.86
SQSTM1-208ENST00000485412 PFDN2Q9UHV9 154 aa9.71□□□□□ -0.86
SQSTM1-208ENST00000485412 SCP2D1Q9UJQ7 156 aa9.71□□□□□ -0.86
SQSTM1-208ENST00000485412 TRAV12-2A0A075B6T6 113 aa9.7□□□□□ -0.86
SQSTM1-208ENST00000485412 H3BP45 60 aa9.7□□□□□ -0.86
SQSTM1-208ENST00000485412 DEFB130BP0DP73 79 aa9.7□□□□□ -0.86
SQSTM1-208ENST00000485412 DEFB130AP0DP74 79 aa9.7□□□□□ -0.86
SQSTM1-208ENST00000485412 ORM2P19652 201 aa9.7□□□□□ -0.86
SQSTM1-208ENST00000485412 SPATA12Q7Z6I5 190 aa9.7□□□□□ -0.86
SQSTM1-208ENST00000485412 MCFD2Q8NI22 146 aa9.7□□□□□ -0.86
SQSTM1-208ENST00000485412 TMEM208Q9BTX3 173 aa9.7□□□□□ -0.86
SQSTM1-208ENST00000485412 WRBO00258 174 aa9.69□□□□□ -0.86
SQSTM1-208ENST00000485412 FABP1P07148 127 aa9.69□□□□□ -0.86
SQSTM1-208ENST00000485412 TNFSF8P32971 234 aa9.69□□□□□ -0.86
SQSTM1-208ENST00000485412 GALR1P47211 349 aa9.69□□□□□ -0.86
SQSTM1-208ENST00000485412 ATP5IP56385 69 aaPredicted RBP9.69□□□□□ -0.86
SQSTM1-208ENST00000485412 RAB11AP62491 216 aa9.69□□□□□ -0.86
SQSTM1-208ENST00000485412 HERC1Q15751 4861 aa9.69□□□□□ -0.86
SQSTM1-208ENST00000485412 OR1B1Q8NGR6 318 aa9.69□□□□□ -0.86
SQSTM1-208ENST00000485412 ZNRF2Q8NHG8 242 aa9.69□□□□□ -0.86
SQSTM1-208ENST00000485412 S100ZQ8WXG8 99 aa9.69□□□□□ -0.86
SQSTM1-208ENST00000485412 TRIM63Q969Q1 353 aa9.69□□□□□ -0.86
SQSTM1-208ENST00000485412 NUDT3O95989 172 aa9.68□□□□□ -0.86
SQSTM1-208ENST00000485412 ANXA3P12429 323 aa9.68□□□□□ -0.86
SQSTM1-208ENST00000485412 VAMP1P23763 118 aa9.68□□□□□ -0.86
SQSTM1-208ENST00000485412 MEOX2P50222 304 aa9.68□□□□□ -0.86
SQSTM1-208ENST00000485412 SRPXP78539 464 aa9.68□□□□□ -0.86
SQSTM1-208ENST00000485412 FGL1Q08830 312 aa9.68□□□□□ -0.86
SQSTM1-208ENST00000485412 ACOT7LQ6ZUV0 252 aa9.68□□□□□ -0.86
SQSTM1-208ENST00000485412 SCGB3A2Q96PL1 93 aa9.68□□□□□ -0.86
SQSTM1-208ENST00000485412 F5H768 121 aa9.67□□□□□ -0.86
SQSTM1-208ENST00000485412 H3BRN7 92 aa9.67□□□□□ -0.86
SQSTM1-208ENST00000485412 SYNGR2O43760 224 aa9.67□□□□□ -0.86
SQSTM1-208ENST00000485412 CCNKO75909 580 aa9.67□□□□□ -0.86
SQSTM1-208ENST00000485412 INSP01308 110 aa9.67□□□□□ -0.86
SQSTM1-208ENST00000485412 CCL18P55774 89 aa9.67□□□□□ -0.86
SQSTM1-208ENST00000485412 PPP1R1AQ13522 171 aa9.67□□□□□ -0.86
SQSTM1-208ENST00000485412 SPANXN5Q5MJ07 72 aa9.67□□□□□ -0.86
SQSTM1-208ENST00000485412 GGNBP1Q5YKI7 109 aa9.67□□□□□ -0.86
SQSTM1-208ENST00000485412 LRTM2Q8N967 370 aa9.67□□□□□ -0.86
SQSTM1-208ENST00000485412 UHRF2Q96PU4 802 aa9.67□□□□□ -0.86
SQSTM1-208ENST00000485412 FAT1Q14517 4588 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 DUXBA0A1W2PPF3 345 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 FABP12A6NFH5 140 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 LYRM9A8MSI8 78 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 HOXB5P09067 269 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 AKR1C1Q04828 323 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 ZNF846Q147U1 533 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 KIR3DS1Q14943 382 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 TMEM128Q5BJH2 165 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 SAMD13Q5VXD3 122 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 ZNF738Q8NE65 137 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 BPIFCQ8NFQ6 507 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 OR4D5Q8NGN0 318 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 TMEM147Q9BVK8 224 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 KRTAP1-5Q9BYS1 174 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 SLC45A2Q9UMX9 530 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 LINC00588Q9Y4M8 146 aa9.66□□□□□ -0.86
SQSTM1-208ENST00000485412 BOLA2-SMG1P6H3BVE0 249 aa9.65□□□□□ -0.86
SQSTM1-208ENST00000485412 SNRPCP09234 159 aaKnown RBP9.65□□□□□ -0.86
SQSTM1-208ENST00000485412 SLC25A6P12236 298 aa9.65□□□□□ -0.86
SQSTM1-208ENST00000485412 S100A5P33763 92 aa9.65□□□□□ -0.86
SQSTM1-208ENST00000485412 HIST1H1AQ02539 215 aaPredicted RBP9.65□□□□□ -0.86
SQSTM1-208ENST00000485412 CLINT1Q14677 625 aa9.65□□□□□ -0.86
SQSTM1-208ENST00000485412 RNF141Q8WVD5 230 aa9.65□□□□□ -0.86
SQSTM1-208ENST00000485412 SHANK2-AS3Q9BTD1 123 aa9.65□□□□□ -0.86
SQSTM1-208ENST00000485412 RABL2BQ9UNT1 228 aa9.65□□□□□ -0.86
SQSTM1-208ENST00000485412 PMS2P5A8MQ11 134 aa9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 ADAP1O75689 374 aa9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 DUSP14O95147 198 aaKnown RBP9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 SFT2D2O95562 160 aa9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 CFDP00746 253 aaPredicted RBP9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 HTN1P15515 57 aa9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 TSPOP30536 169 aa9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 POLR2GP62487 172 aaKnown RBP eCLIP9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 CYP2G1PQ6ZSU1 146 aa9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 CCDC190Q86UF4 302 aa9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 OR8A1Q8NGG7 326 aa9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 PARD6GQ9BYG4 376 aaPredicted RBP9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 RABL2AQ9UBK7 228 aaPredicted RBP9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 V9GYH0 126 aa9.64□□□□□ -0.87
SQSTM1-208ENST00000485412 SMCO3A2RU48 225 aa9.63□□□□□ -0.87
SQSTM1-208ENST00000485412 EPM2AB3EWF7 344 aa9.63□□□□□ -0.87
SQSTM1-208ENST00000485412 MED6O75586 246 aa9.63□□□□□ -0.87
SQSTM1-208ENST00000485412 CXCL3P19876 107 aa9.63□□□□□ -0.87
SQSTM1-208ENST00000485412 PATE2Q6UY27 113 aa9.63□□□□□ -0.87
SQSTM1-208ENST00000485412 TMEM144Q7Z5S9 345 aa9.63□□□□□ -0.87
SQSTM1-208ENST00000485412 GPR82Q96P67 336 aa9.63□□□□□ -0.87
SQSTM1-208ENST00000485412 CIB3Q96Q77 187 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms