RNA–Protein interactions for RNA: ENST00000476391.5

HDAC1-206, Transcript of histone deacetylase 1, humanhuman

TSL 1 (best)

Gene HDAC1, Length 2,409 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-206ENST00000476391 SRSF12Q8WXF0 261 aaKnown RBP11.05□□□□□ -0.64
HDAC1-206ENST00000476391 DLX4Q92988 240 aaPredicted RBP11.05□□□□□ -0.64
HDAC1-206ENST00000476391 TRBV6-1A0A0K0K1D8 114 aa11.05□□□□□ -0.64
HDAC1-206ENST00000476391 IGKCP01834 107 aa11.05□□□□□ -0.64
HDAC1-206ENST00000476391 NHLRC4P0CG21 123 aaPredicted RBP11.05□□□□□ -0.64
HDAC1-206ENST00000476391 MOGAT3Q86VF5 341 aa11.05□□□□□ -0.64
HDAC1-206ENST00000476391 METRNQ9UJH8 293 aa11.05□□□□□ -0.64
HDAC1-206ENST00000476391 GAGE12JA6NER3 117 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 IQCF6A8MYZ5 107 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 TMEM262E9PQX1 116 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 GAGE7O76087 117 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 GAGE12FP0CL80 117 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 GAGE12GP0CL81 117 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 GAGE12IP0CL82 117 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 SRD5A1P18405 259 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 MEOX1P50221 254 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 GAGE4Q13068 117 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 FAM104BQ5XKR9 115 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 TUSC5Q8IXB3 177 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 C11orf53Q8IXP5 236 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 RBMXL3Q8N7X1 1067 aaKnown RBP11.04□□□□□ -0.64
HDAC1-206ENST00000476391 GLMPQ8WWB7 406 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 TMEM158Q8WZ71 300 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 Q9H3A6 140 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 AGRNO00468 2067 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 TNCP24821 2201 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 BRI3O95415 125 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 RFPL3SP0C7P2 107 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 C1orf229Q6ZS94 237 aaPredicted RBP11.04□□□□□ -0.64
HDAC1-206ENST00000476391 ZNF826PQ6ZT77 177 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 HARBI1Q96MB7 349 aa11.04□□□□□ -0.64
HDAC1-206ENST00000476391 LINC01619G3V211 115 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 K7EMI3 77 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 CD27P26842 260 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 FXYD7P58549 80 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 EDDM3AQ14507 147 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 PEAR1Q5VY43 1037 aaPredicted RBP11.03□□□□□ -0.64
HDAC1-206ENST00000476391 THAP8Q8NA92 274 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 CITED1Q99966 193 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 CDH23Q9H251 3354 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 PLAUP00749 431 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 RBP4P02753 201 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 TFF1P04155 84 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 TBC1D28Q2M2D7 210 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 TEN1Q86WV5 123 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 HIF1ANQ9NWT6 349 aa11.03□□□□□ -0.64
HDAC1-206ENST00000476391 IGKV1D-37A0A075B6S9 117 aa11.02□□□□□ -0.65
HDAC1-206ENST00000476391 RHODO00212 210 aa11.02□□□□□ -0.65
HDAC1-206ENST00000476391 COX6A1P12074 109 aa11.02□□□□□ -0.65
HDAC1-206ENST00000476391 ARL3P36405 182 aa11.02□□□□□ -0.65
HDAC1-206ENST00000476391 ERHP84090 104 aaKnown RBP11.02□□□□□ -0.65
HDAC1-206ENST00000476391 ZC2HC1BQ5TFG8 222 aa11.02□□□□□ -0.65
HDAC1-206ENST00000476391 HIST1H4GQ99525 98 aa11.02□□□□□ -0.65
HDAC1-206ENST00000476391 FAM90A27PA6NNH2 459 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 INS-IGF2F8WCM5 200 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 IGLV2-11P01706 119 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 HOXB4P17483 251 aaPredicted RBP11.01□□□□□ -0.65
HDAC1-206ENST00000476391 TWIST1Q15672 202 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 CXorf67Q86X51 503 aaPredicted RBP11.01□□□□□ -0.65
HDAC1-206ENST00000476391 TMEM190Q8WZ59 177 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 NPIPB3Q92617 1050 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 DPM2O94777 84 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 ZNF688P0C7X2 276 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 SAA2P0DJI9 122 aaPredicted RBP11.01□□□□□ -0.65
HDAC1-206ENST00000476391 ALKBH6Q3KRA9 238 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 HES3Q5TGS1 186 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 MORN3Q6PF18 240 aaPredicted RBP11.01□□□□□ -0.65
HDAC1-206ENST00000476391 PRNTQ86SH4 94 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 GTSCR1Q86UQ5 136 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 OBP2BQ9NPH6 170 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 OTORQ9NRC9 128 aa11.01□□□□□ -0.65
HDAC1-206ENST00000476391 TRBV7-3A0A075B6L6 115 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 LINC01546A6NGU7 62 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 FABP5P3A8MUU1 101 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 ATP5LO75964 103 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 IGHV3-13P01766 116 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 GP9P14770 177 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 MDP1Q86V88 176 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 AMN1Q8IY45 258 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 FAM169BQ8N8A8 192 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 CARD19Q96LW7 228 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 SPEGQ15772 3267 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 TRAV8-1A0A0A6YYK1 113 aa11□□□□□ -0.65
HDAC1-206ENST00000476391 HOXA3O43365 443 aaPredicted RBP11□□□□□ -0.65
HDAC1-206ENST00000476391 ZCCHC24Q8N2G6 241 aaKnown RBP11□□□□□ -0.65
HDAC1-206ENST00000476391 TMEM8BA6NDV4 472 aa10.99□□□□□ -0.65
HDAC1-206ENST00000476391 ZNF785A8K8V0 405 aa10.99□□□□□ -0.65
HDAC1-206ENST00000476391 IL4P05112 153 aa10.99□□□□□ -0.65
HDAC1-206ENST00000476391 PRSS1P07477 247 aa10.99□□□□□ -0.65
HDAC1-206ENST00000476391 NDUFV3P56181 108 aaKnown RBP10.99□□□□□ -0.65
HDAC1-206ENST00000476391 HOXA4Q00056 320 aaPredicted RBP10.99□□□□□ -0.65
HDAC1-206ENST00000476391 MRPL51Q4U2R6 128 aaKnown RBP10.99□□□□□ -0.65
HDAC1-206ENST00000476391 CD177Q8N6Q3 437 aa10.99□□□□□ -0.65
HDAC1-206ENST00000476391 FLYWCH2Q96CP2 140 aaKnown RBP10.99□□□□□ -0.65
HDAC1-206ENST00000476391 CXXC4Q9H2H0 198 aa10.99□□□□□ -0.65
HDAC1-206ENST00000476391 AKIRIN1Q9H9L7 192 aaPredicted RBP10.99□□□□□ -0.65
HDAC1-206ENST00000476391 ORM2P19652 201 aa10.99□□□□□ -0.65
HDAC1-206ENST00000476391 NXPH1P58417 271 aa10.99□□□□□ -0.65
HDAC1-206ENST00000476391 WFDC3Q8IUB2 231 aa10.99□□□□□ -0.65
HDAC1-206ENST00000476391 DEFB119Q8N690 84 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms