RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 MRPL27Q9P0M9 148 aaKnown RBP9.34□□□□□ -0.91
PTPRF-203ENST00000372407 MINOS1-NBL1R4GNA1 71 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 GTF3C1Q12789 2109 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 TRGV11A0A075B6L2 103 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 RBMY1BA6NDE4 496 aaKnown RBP9.34□□□□□ -0.91
PTPRF-203ENST00000372407 RBMY1EA6NEQ0 496 aaKnown RBP9.34□□□□□ -0.91
PTPRF-203ENST00000372407 FNDC10F2Z333 226 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 RBMY1DP0C7P1 496 aaKnown RBP9.34□□□□□ -0.91
PTPRF-203ENST00000372407 RBMY1A1P0DJD3 496 aaKnown RBP9.34□□□□□ -0.91
PTPRF-203ENST00000372407 RBMY1CP0DJD4 496 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 CD33P20138 364 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 C5orf64Q2M2E5 130 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 CD300EQ496F6 205 aaPredicted RBP9.34□□□□□ -0.91
PTPRF-203ENST00000372407 TPTE2P1Q5T6R2 138 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 LCN12Q6JVE5 192 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 LYZL1Q6UWQ5 148 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 LHFPL4Q7Z7J7 247 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 NUP35Q8NFH5 326 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 WNK1Q9H4A3 2382 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 IGKV1D-17A0A075B6S4 117 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 TRAV40A0A0B4J280 105 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 RPL15P61313 204 aaKnown RBP9.34□□□□□ -0.91
PTPRF-203ENST00000372407 LY6DQ14210 128 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 STHQ8IWL8 128 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 CRIM1Q9NZV1 1036 aa9.34□□□□□ -0.91
PTPRF-203ENST00000372407 NCR2O95944 276 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 ZNF138P52744 262 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 KLF17Q5JT82 389 aaPredicted RBP9.33□□□□□ -0.92
PTPRF-203ENST00000372407 C20orf204Q6ZNR8 217 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 LYPD1Q8N2G4 141 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 DPH3Q96FX2 82 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 SIGLEC9Q9Y336 463 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 CACNA1AO00555 2505 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 TRAV2A0A0B4J234 112 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 MBD3L4A6NDZ8 208 aaPredicted RBP9.33□□□□□ -0.92
PTPRF-203ENST00000372407 MBD3L3A6NE82 208 aaPredicted RBP9.33□□□□□ -0.92
PTPRF-203ENST00000372407 MBD3L5A6NJ08 208 aaPredicted RBP9.33□□□□□ -0.92
PTPRF-203ENST00000372407 LINC00205P59089 165 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 LAGE3Q14657 143 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 MST1LQ2TV78 715 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 CFAP161Q6P656 301 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 RPRMLQ8N4K4 120 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 MBD3L2Q8NHZ7 208 aaPredicted RBP9.33□□□□□ -0.92
PTPRF-203ENST00000372407 YAE1D1Q9NRH1 226 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 RNASE2P10153 161 aaKnown RBP9.33□□□□□ -0.92
PTPRF-203ENST00000372407 CD28P10747 220 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 VMO1Q7Z5L0 202 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 PTPRDP23468 1912 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 TRAV8-1A0A0A6YYK1 113 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 IGKV3D-20A0A0C4DH25 116 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 DLEU1O43261 78 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 C9orf139Q6ZV77 190 aa9.33□□□□□ -0.92
PTPRF-203ENST00000372407 C9JQL5 133 aa9.32□□□□□ -0.92
PTPRF-203ENST00000372407 GHRHP01286 108 aa9.32□□□□□ -0.92
PTPRF-203ENST00000372407 PAX2Q02962 417 aa9.32□□□□□ -0.92
PTPRF-203ENST00000372407 SAMD5Q5TGI4 173 aa9.32□□□□□ -0.92
PTPRF-203ENST00000372407 A8MWV9 139 aa9.32□□□□□ -0.92
PTPRF-203ENST00000372407 ARTNQ5T4W7 220 aa9.32□□□□□ -0.92
PTPRF-203ENST00000372407 ETV2O00321 342 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-203ENST00000372407 ITGB1BP1O14713 200 aa9.32□□□□□ -0.92
PTPRF-203ENST00000372407 IGHG3P01860 377 aa9.32□□□□□ -0.92
PTPRF-203ENST00000372407 VDAC2P45880 294 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-203ENST00000372407 EFNA4P52798 201 aa9.32□□□□□ -0.92
PTPRF-203ENST00000372407 GAFA1Q96PS6 74 aa9.32□□□□□ -0.92
PTPRF-203ENST00000372407 TMEM95Q3KNT9 176 aa9.32□□□□□ -0.92
PTPRF-203ENST00000372407 BCL6BQ8N143 479 aaPredicted RBP9.32□□□□□ -0.92
PTPRF-203ENST00000372407 IGKV1-6A0A0C4DH72 117 aa9.31□□□□□ -0.92
PTPRF-203ENST00000372407 A0A1W2PRX2 142 aa9.31□□□□□ -0.92
PTPRF-203ENST00000372407 PRB4P10163 310 aaPredicted RBP9.31□□□□□ -0.92
PTPRF-203ENST00000372407 C1orf147Q96MC9 270 aaPredicted RBP9.31□□□□□ -0.92
PTPRF-203ENST00000372407 ANAPC1Q9H1A4 1944 aa9.31□□□□□ -0.92
PTPRF-203ENST00000372407 A6NNC1 897 aa9.31□□□□□ -0.92
PTPRF-203ENST00000372407 HTN3P15516 51 aa9.31□□□□□ -0.92
PTPRF-203ENST00000372407 GUSBP1Q15486 140 aa9.31□□□□□ -0.92
PTPRF-203ENST00000372407 GAGE13Q4V321 117 aa9.31□□□□□ -0.92
PTPRF-203ENST00000372407 SPOCK3Q9BQ16 436 aa9.31□□□□□ -0.92
PTPRF-203ENST00000372407 SYS1-DBNDD2H3BUS1 97 aa9.31□□□□□ -0.92
PTPRF-203ENST00000372407 MLANAQ16655 118 aa9.31□□□□□ -0.92
PTPRF-203ENST00000372407 GTSCR1Q86UQ5 136 aa9.31□□□□□ -0.92
PTPRF-203ENST00000372407 SRD5A1P18405 259 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 DMRTC2Q8IXT2 367 aaPredicted RBP9.3□□□□□ -0.92
PTPRF-203ENST00000372407 ZNF664Q8N3J9 261 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 ERG28Q9UKR5 140 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 SRRM4A7MD48 611 aaKnown RBP9.3□□□□□ -0.92
PTPRF-203ENST00000372407 IGKV1-16P04430 117 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 HS3ST6Q96QI5 342 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 TRGV4A0A0C4DH28 118 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 BUB1B-PAK6H3BSN5 160 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 PFN1P07737 140 aaKnown RBP9.3□□□□□ -0.92
PTPRF-203ENST00000372407 MPV17L2Q567V2 206 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 PIP4P1Q86T03 277 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 Q8TAT8 98 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 SIGMAR1Q99720 223 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 hDV102S1A0JD36 115 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 TOMM40O96008 361 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 KLRD1Q13241 179 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 PSG3Q16557 428 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 Q6ZS92 163 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 LINC00477Q96M19 166 aa9.3□□□□□ -0.92
PTPRF-203ENST00000372407 TRAV12-3A0A0B4J271 114 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms