RNA–Protein interactions for RNA: ENST00000355497.9

LMX1B-201, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 5,809 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-201ENST00000355497 TRPT1Q86TN4 253 aaKnown RBP12.15□□□□□ -0.47
LMX1B-201ENST00000355497 AMN1Q8IY45 258 aa12.15□□□□□ -0.47
LMX1B-201ENST00000355497 NTF4P34130 210 aa12.14□□□□□ -0.47
LMX1B-201ENST00000355497 Q86TA4 180 aa12.14□□□□□ -0.47
LMX1B-201ENST00000355497 TRIP12Q14669 1992 aaPredicted RBP12.14□□□□□ -0.47
LMX1B-201ENST00000355497 PSPNO60542 156 aa12.14□□□□□ -0.47
LMX1B-201ENST00000355497 FLVCR1-AS1Q8TAF5 88 aa12.14□□□□□ -0.47
LMX1B-201ENST00000355497 B4DSR2 109 aa12.14□□□□□ -0.47
LMX1B-201ENST00000355497 GGNQ86UU5 652 aa12.14□□□□□ -0.47
LMX1B-201ENST00000355497 GAFA1Q96PS6 74 aa12.14□□□□□ -0.47
LMX1B-201ENST00000355497 LIME1Q9H400 295 aa12.14□□□□□ -0.47
LMX1B-201ENST00000355497 RFNGQ9Y644 331 aa12.14□□□□□ -0.47
LMX1B-201ENST00000355497 GAGE12BA1L429 117 aa12.13□□□□□ -0.47
LMX1B-201ENST00000355497 KLHL30-AS1Q8NEE0 82 aa12.13□□□□□ -0.47
LMX1B-201ENST00000355497 TRACP01848 142 aa12.13□□□□□ -0.47
LMX1B-201ENST00000355497 C20orf204Q6ZNR8 217 aa12.13□□□□□ -0.47
LMX1B-201ENST00000355497 RHPN1-AS1Q9BWJ2 59 aa12.13□□□□□ -0.47
LMX1B-201ENST00000355497 ATAD5Q96QE3 1844 aa12.13□□□□□ -0.47
LMX1B-201ENST00000355497 CSRP1P21291 193 aaKnown RBP12.13□□□□□ -0.47
LMX1B-201ENST00000355497 LY6DQ14210 128 aa12.13□□□□□ -0.47
LMX1B-201ENST00000355497 BRD3OSQ6XYD6 125 aa12.13□□□□□ -0.47
LMX1B-201ENST00000355497 TCTEX1D4Q5JR98 221 aa12.13□□□□□ -0.47
LMX1B-201ENST00000355497 LCNL1Q6ZST4 164 aa12.13□□□□□ -0.47
LMX1B-201ENST00000355497 SPACA3Q8IXA5 215 aa12.13□□□□□ -0.47
LMX1B-201ENST00000355497 COL24A1Q17RW2 1714 aa12.12□□□□□ -0.47
LMX1B-201ENST00000355497 ZFP36L1Q07352 338 aaKnown RBP12.12□□□□□ -0.47
LMX1B-201ENST00000355497 VWCEQ96DN2 955 aa12.12□□□□□ -0.47
LMX1B-201ENST00000355497 PTPRFP10586 1907 aa12.12□□□□□ -0.47
LMX1B-201ENST00000355497 SIGLEC9Q9Y336 463 aa12.12□□□□□ -0.47
LMX1B-201ENST00000355497 FOXG1P55316 489 aaPredicted RBP12.11□□□□□ -0.47
LMX1B-201ENST00000355497 REG4Q9BYZ8 158 aa12.11□□□□□ -0.47
LMX1B-201ENST00000355497 KNTC1P50748 2209 aa12.11□□□□□ -0.47
LMX1B-201ENST00000355497 CKAP5Q14008 2032 aa12.11□□□□□ -0.47
LMX1B-201ENST00000355497 TRBV6-6A0A0A6YYG2 114 aa12.11□□□□□ -0.47
LMX1B-201ENST00000355497 LINC00473A8K010 186 aa12.11□□□□□ -0.47
LMX1B-201ENST00000355497 INAFM2P0DMQ5 153 aa12.11□□□□□ -0.47
LMX1B-201ENST00000355497 TCF15Q12870 199 aa12.11□□□□□ -0.47
LMX1B-201ENST00000355497 TMEM105Q8N8V8 129 aa12.11□□□□□ -0.47
LMX1B-201ENST00000355497 PMVKQ15126 192 aa12.11□□□□□ -0.47
LMX1B-201ENST00000355497 TMEM141Q96I45 108 aa12.11□□□□□ -0.47
LMX1B-201ENST00000355497 MCRIP2Q9BUT9 160 aaKnown RBP12.11□□□□□ -0.47
LMX1B-201ENST00000355497 COL11A1P12107 1806 aaPredicted RBP12.11□□□□□ -0.47
LMX1B-201ENST00000355497 DEFB130BP0DP73 79 aa12.1□□□□□ -0.47
LMX1B-201ENST00000355497 DEFB130AP0DP74 79 aa12.1□□□□□ -0.47
LMX1B-201ENST00000355497 PYY3Q5JQD4 70 aa12.1□□□□□ -0.47
LMX1B-201ENST00000355497 PIKFYVEQ9Y2I7 2098 aa12.1□□□□□ -0.47
LMX1B-201ENST00000355497 FNDC10F2Z333 226 aa12.1□□□□□ -0.47
LMX1B-201ENST00000355497 HAPLN4Q86UW8 402 aa12.1□□□□□ -0.47
LMX1B-201ENST00000355497 SHANK2-AS3Q9BTD1 123 aa12.1□□□□□ -0.47
LMX1B-201ENST00000355497 DAZ1Q9NQZ3 744 aaKnown RBP12.1□□□□□ -0.47
LMX1B-201ENST00000355497 ZNF561-AS1K7EIQ3 104 aa12.1□□□□□ -0.47
LMX1B-201ENST00000355497 EFNA2O43921 213 aa12.1□□□□□ -0.47
LMX1B-201ENST00000355497 MSRB2Q9Y3D2 182 aa12.1□□□□□ -0.47
LMX1B-201ENST00000355497 C15orf62A8K5M9 175 aa12.09□□□□□ -0.47
LMX1B-201ENST00000355497 TMEM75Q8N9X5 138 aa12.09□□□□□ -0.47
LMX1B-201ENST00000355497 TP53TG1Q9Y2A0 90 aa12.09□□□□□ -0.47
LMX1B-201ENST00000355497 ZNF664Q8N3J9 261 aa12.09□□□□□ -0.47
LMX1B-201ENST00000355497 RBBP6Q7Z6E9 1792 aaKnown RBP12.09□□□□□ -0.47
LMX1B-201ENST00000355497 GAS1P54826 345 aa12.09□□□□□ -0.47
LMX1B-201ENST00000355497 Q6P435 159 aa12.09□□□□□ -0.47
LMX1B-201ENST00000355497 NKAPP1Q8N9T2 125 aa12.09□□□□□ -0.47
LMX1B-201ENST00000355497 SRSF8Q9BRL6 282 aaKnown RBP12.09□□□□□ -0.47
LMX1B-201ENST00000355497 MTCL1Q9Y4B5 1905 aaKnown RBP12.09□□□□□ -0.47
LMX1B-201ENST00000355497 RNASE2P10153 161 aaKnown RBP12.09□□□□□ -0.47
LMX1B-201ENST00000355497 STPG4Q8N801 248 aa12.09□□□□□ -0.47
LMX1B-201ENST00000355497 UBL5Q9BZL1 73 aa12.09□□□□□ -0.47
LMX1B-201ENST00000355497 ARMS2P0C7Q2 107 aa12.08□□□□□ -0.47
LMX1B-201ENST00000355497 DNAJC13O75165 2243 aa12.08□□□□□ -0.48
LMX1B-201ENST00000355497 TRAV25A0A0B4J276 109 aa12.08□□□□□ -0.48
LMX1B-201ENST00000355497 PDE6HQ13956 83 aa12.08□□□□□ -0.48
LMX1B-201ENST00000355497 IL17RELQ6ZVW7 336 aa12.08□□□□□ -0.48
LMX1B-201ENST00000355497 IGHG3P01860 377 aa12.08□□□□□ -0.48
LMX1B-201ENST00000355497 PNRC2Q9NPJ4 139 aaKnown RBP12.08□□□□□ -0.48
LMX1B-201ENST00000355497 NTN3O00634 580 aaPredicted RBP12.07□□□□□ -0.48
LMX1B-201ENST00000355497 RNF114Q9Y508 228 aa12.07□□□□□ -0.48
LMX1B-201ENST00000355497 ZNF236Q9UL36 1845 aa12.07□□□□□ -0.48
LMX1B-201ENST00000355497 MST1P26927 711 aa12.07□□□□□ -0.48
LMX1B-201ENST00000355497 HAMPP81172 84 aa12.07□□□□□ -0.48
LMX1B-201ENST00000355497 HEATR5BQ9P2D3 2071 aa12.07□□□□□ -0.48
LMX1B-201ENST00000355497 DKK1O94907 266 aa12.07□□□□□ -0.48
LMX1B-201ENST00000355497 ZNF492Q9P255 531 aa12.07□□□□□ -0.48
LMX1B-201ENST00000355497 I3L3M4 83 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 MMP23AO75900 390 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 UTF1Q5T230 341 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 TRBV25-1A0A075B6N4 114 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 OVOL3O00110 214 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 IFITM1P13164 125 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 Q0VG73 95 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 TRBV20-1A0A075B6N2 111 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 FAM231BA6NCW3 169 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 RHODO00212 210 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 LYL1P12980 280 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 DEFB131AP59861 70 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 Q8N8P6 123 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 LINC01356Q8N9X3 169 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 SPANXDQ9BXN6 97 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 GAGE12JA6NER3 117 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 SYNJ2BPP57105 145 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 GAGE1Q13065 139 aa12.06□□□□□ -0.48
LMX1B-201ENST00000355497 GAGE4Q13068 117 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 155.9 ms