RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 TIMM21Q9BVV7 248 aa10□□□□□ -0.81
PCF11-201ENST00000298281 ROS1P08922 2347 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 FAM216BQ8N7L0 139 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 CHCHD1Q96BP2 118 aaKnown RBP9.99□□□□□ -0.81
PCF11-201ENST00000298281 PLSCR4Q9NRQ2 329 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 C9JAW5 83 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 RFPL3SP0C7P2 107 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 IFI27L1Q96BM0 104 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 CSTL1Q9H114 145 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 KIAA1549Q9HCM3 1950 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 C4orf51C9J302 202 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 UPK2O00526 184 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 A0A0A6YYD4 124 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 IGHV4-28A0A0C4DH34 117 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 TIAF1O95411 115 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 SRP19P09132 144 aaKnown RBP9.99□□□□□ -0.81
PCF11-201ENST00000298281 IGKV2D-24A0A075B6R9 120 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 A0A0G2JK05 382 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.99□□□□□ -0.81
PCF11-201ENST00000298281 MBD3L4A6NDZ8 208 aaPredicted RBP9.99□□□□□ -0.81
PCF11-201ENST00000298281 MBD3L3A6NE82 208 aaPredicted RBP9.99□□□□□ -0.81
PCF11-201ENST00000298281 MBD3L5A6NJ08 208 aaPredicted RBP9.99□□□□□ -0.81
PCF11-201ENST00000298281 C1QCP02747 245 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 MBD3L2Q8NHZ7 208 aaPredicted RBP9.99□□□□□ -0.81
PCF11-201ENST00000298281 WFDC6Q9BQY6 131 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 TMEM133Q9H2Q1 129 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 VWC2Q2TAL6 325 aa9.99□□□□□ -0.81
PCF11-201ENST00000298281 MRPL14Q6P1L8 145 aaKnown RBP9.98□□□□□ -0.81
PCF11-201ENST00000298281 A0A1W2PRE2 83 aa9.98□□□□□ -0.81
PCF11-201ENST00000298281 IGHV3-16A0A0C4DH30 117 aa9.98□□□□□ -0.81
PCF11-201ENST00000298281 TRBV25-1A0A075B6N4 114 aa9.98□□□□□ -0.81
PCF11-201ENST00000298281 SELLP14151 372 aa9.98□□□□□ -0.81
PCF11-201ENST00000298281 IGHV1-2P23083 117 aa9.98□□□□□ -0.81
PCF11-201ENST00000298281 LCN12Q6JVE5 192 aa9.98□□□□□ -0.81
PCF11-201ENST00000298281 TRBV6-7A0A0A0MS04 114 aa9.98□□□□□ -0.81
PCF11-201ENST00000298281 ERVH48-1M5A8F1 160 aa9.98□□□□□ -0.81
PCF11-201ENST00000298281 GNB1LQ9BYB4 327 aa9.98□□□□□ -0.81
PCF11-201ENST00000298281 FBLN5Q9UBX5 448 aa9.98□□□□□ -0.81
PCF11-201ENST00000298281 A0A096LPF7 62 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 PRDM6Q9NQX0 595 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 OSTCQ9NRP0 149 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 MSRB2Q9Y3D2 182 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 IGHV4-4A0A075B6R2 117 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 KLF17Q5JT82 389 aaPredicted RBP9.97□□□□□ -0.81
PCF11-201ENST00000298281 IGKV1OR2-108A0A075B7D4 117 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 CSRP1P21291 193 aaKnown RBP9.97□□□□□ -0.81
PCF11-201ENST00000298281 VMO1Q7Z5L0 202 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 ANGP03950 147 aaKnown RBP9.97□□□□□ -0.81
PCF11-201ENST00000298281 FOXG1P55316 489 aaPredicted RBP9.97□□□□□ -0.81
PCF11-201ENST00000298281 RPL23P62829 140 aaKnown RBP9.97□□□□□ -0.81
PCF11-201ENST00000298281 ZNF525Q8N782 197 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 ZNF503Q96F45 646 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 PARP14Q460N5 1801 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 NXPH4O95158 308 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 C15orf32Q32M92 178 aa9.97□□□□□ -0.81
PCF11-201ENST00000298281 LYNX1G3V0Z9 82 aa9.96□□□□□ -0.81
PCF11-201ENST00000298281 LYNX1P0DP58 116 aa9.96□□□□□ -0.81
PCF11-201ENST00000298281 FAM90A2PQ658T7 463 aa9.96□□□□□ -0.81
PCF11-201ENST00000298281 ADAMTSL1Q8N6G6 1762 aa9.96□□□□□ -0.81
PCF11-201ENST00000298281 A0A087WWL8 130 aa9.96□□□□□ -0.81
PCF11-201ENST00000298281 SLC25A39Q9BZJ4 359 aaPredicted RBP9.96□□□□□ -0.81
PCF11-201ENST00000298281 PSG8Q9UQ74 426 aa9.96□□□□□ -0.81
PCF11-201ENST00000298281 WNK3Q9BYP7 1800 aa9.96□□□□□ -0.81
PCF11-201ENST00000298281 SERF1AO75920 110 aa9.96□□□□□ -0.81
PCF11-201ENST00000298281 SPINK8P0C7L1 97 aa9.96□□□□□ -0.81
PCF11-201ENST00000298281 ATP5G3P48201 142 aa9.96□□□□□ -0.81
PCF11-201ENST00000298281 SPRED2Q7Z698 418 aa9.96□□□□□ -0.81
PCF11-201ENST00000298281 IGLV3-12A0A075B6K2 115 aa9.96□□□□□ -0.82
PCF11-201ENST00000298281 IGF2BP2-AS1Q96M15 143 aa9.96□□□□□ -0.82
PCF11-201ENST00000298281 TNRC6BQ9UPQ9 1833 aaKnown RBP9.95□□□□□ -0.82
PCF11-201ENST00000298281 PRSS29PA6NIE9 313 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 PKIGQ9Y2B9 76 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 E9PLN8 166 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 CCL3L1P16619 93 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 IFITM2Q01629 132 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 RTBDNQ9BSG5 229 aaPredicted RBP9.95□□□□□ -0.82
PCF11-201ENST00000298281 TRBV7-1A0A0A6YYK4 115 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 SAA2-SAA4A0A096LPE2 208 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 K7ERS5 55 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 OR9G9P0C7N8 305 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 SAA2P0DJI9 122 aaPredicted RBP9.95□□□□□ -0.82
PCF11-201ENST00000298281 MORN2Q502X0 79 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 CASC2Q6XLA1 102 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 ZNF497Q6ZNH5 498 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 TRAV12-2A0A075B6T6 113 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 C1QTNF9P0C862 333 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 SUPT4H1P63272 117 aaKnown RBP9.95□□□□□ -0.82
PCF11-201ENST00000298281 ZNF124Q15973 351 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 NDUFB1O75438 58 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 SMPXQ9UHP9 88 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 LAMTOR2Q9Y2Q5 125 aa9.95□□□□□ -0.82
PCF11-201ENST00000298281 CELA3AP09093 270 aa9.94□□□□□ -0.82
PCF11-201ENST00000298281 ZNF329Q86UD4 541 aa9.94□□□□□ -0.82
PCF11-201ENST00000298281 DMRTC2Q8IXT2 367 aaPredicted RBP9.94□□□□□ -0.82
PCF11-201ENST00000298281 NAA38Q9BRA0 125 aaKnown RBP9.94□□□□□ -0.82
PCF11-201ENST00000298281 RAMP1O60894 148 aa9.94□□□□□ -0.82
PCF11-201ENST00000298281 CT83Q5H943 113 aa9.94□□□□□ -0.82
PCF11-201ENST00000298281 OOSP1A8MZH6 123 aa9.94□□□□□ -0.82
PCF11-201ENST00000298281 LINC00114Q6XXX2 140 aa9.94□□□□□ -0.82
PCF11-201ENST00000298281 WBP1Q96G27 269 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms