RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 SPCS1Q9Y6A9 102 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 D6R8Y8 96 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 C1QTNF4Q9BXJ3 329 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 IGKV1-16P04430 117 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 NMSQ5H8A3 153 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 RFNGQ9Y644 331 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 J3QKU1 62 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 CNOT1A5YKK6 2376 aaKnown RBP14.05□□□□□ -0.16
SHANK1-201ENST00000293441 DTX1Q86Y01 620 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 PHLDA1Q8WV24 401 aaPredicted RBP14.05□□□□□ -0.16
SHANK1-201ENST00000293441 AGMATQ9BSE5 352 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 POLEQ07864 2286 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 PSG3Q16557 428 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 IFI27L1Q96BM0 104 aa14.05□□□□□ -0.16
SHANK1-201ENST00000293441 PTPRDP23468 1912 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 DEFB130BP0DP73 79 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 DEFB130AP0DP74 79 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 PLNP26678 52 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 MLANAQ16655 118 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 ERCC8Q13216 396 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 ATP5L2Q7Z4Y8 100 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 CHCHD1Q96BP2 118 aaKnown RBP14.04□□□□□ -0.16
SHANK1-201ENST00000293441 TRBV6-6A0A0A6YYG2 114 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 DERL1Q9BUN8 251 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 CEP250Q9BV73 2442 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 GHRHP01286 108 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 CST9LQ9H4G1 147 aa14.04□□□□□ -0.16
SHANK1-201ENST00000293441 GATA3P23771 443 aa14.03□□□□□ -0.16
SHANK1-201ENST00000293441 LSM4Q9Y4Z0 139 aaKnown RBP14.03□□□□□ -0.16
SHANK1-201ENST00000293441 LRRK1Q38SD2 2015 aa14.03□□□□□ -0.16
SHANK1-201ENST00000293441 DEFB131AP59861 70 aa14.03□□□□□ -0.16
SHANK1-201ENST00000293441 COL6A6A6NMZ7 2263 aa14.03□□□□□ -0.16
SHANK1-201ENST00000293441 LY6G6EA0A0G2JKS1 128 aa14.03□□□□□ -0.16
SHANK1-201ENST00000293441 DAZ1Q9NQZ3 744 aaKnown RBP14.03□□□□□ -0.16
SHANK1-201ENST00000293441 U3KQA8 63 aa14.03□□□□□ -0.16
SHANK1-201ENST00000293441 KIAA2026Q5HYC2 2103 aa14.03□□□□□ -0.16
SHANK1-201ENST00000293441 ATP6V0E1O15342 81 aa14.03□□□□□ -0.16
SHANK1-201ENST00000293441 RLFQ13129 1914 aa14.03□□□□□ -0.16
SHANK1-201ENST00000293441 UBE2E1P51965 193 aa14.02□□□□□ -0.16
SHANK1-201ENST00000293441 H3BUT2 72 aa14.02□□□□□ -0.16
SHANK1-201ENST00000293441 IGHV1-69DA0A0B4J2H0 117 aa14.02□□□□□ -0.17
SHANK1-201ENST00000293441 IGHV1-69P01742 117 aa14.02□□□□□ -0.17
SHANK1-201ENST00000293441 EP300Q09472 2414 aaPredicted RBP14.02□□□□□ -0.17
SHANK1-201ENST00000293441 HOXA3O43365 443 aaPredicted RBP14.02□□□□□ -0.17
SHANK1-201ENST00000293441 FOXL2NBQ6ZUU3 175 aa14.02□□□□□ -0.17
SHANK1-201ENST00000293441 C14orf178Q8N769 122 aaPredicted RBP14.02□□□□□ -0.17
SHANK1-201ENST00000293441 TMEM14EPQ6UXP3 125 aa14.02□□□□□ -0.17
SHANK1-201ENST00000293441 TRAV8-1A0A0A6YYK1 113 aa14.01□□□□□ -0.17
SHANK1-201ENST00000293441 RNASE2P10153 161 aaKnown RBP14.01□□□□□ -0.17
SHANK1-201ENST00000293441 A0A087WWL8 130 aa14.01□□□□□ -0.17
SHANK1-201ENST00000293441 QRFPP83859 136 aa14.01□□□□□ -0.17
SHANK1-201ENST00000293441 GLRX5Q86SX6 157 aa14.01□□□□□ -0.17
SHANK1-201ENST00000293441 MORN3Q6PF18 240 aaPredicted RBP14.01□□□□□ -0.17
SHANK1-201ENST00000293441 FGF16O43320 207 aa14.01□□□□□ -0.17
SHANK1-201ENST00000293441 LINC01619G3V211 115 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 HS3ST6Q96QI5 342 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 TEX43Q6ZNM6 134 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 C15orf62A8K5M9 175 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 CSTL1Q9H114 145 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 JPT2Q9H910 190 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 SPTBN2O15020 2390 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 WDR81Q562E7 1941 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 A0A1B0GV72 72 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 IL17RELQ6ZVW7 336 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 CFHR3Q02985 330 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 RPP25LQ8N5L8 163 aaKnown RBP14□□□□□ -0.17
SHANK1-201ENST00000293441 CR1LQ2VPA4 569 aa14□□□□□ -0.17
SHANK1-201ENST00000293441 FAM110DQ8TAY7 271 aaPredicted RBP14□□□□□ -0.17
SHANK1-201ENST00000293441 PLA2G2CQ5R387 149 aa13.99□□□□□ -0.17
SHANK1-201ENST00000293441 DMRTC2Q8IXT2 367 aaPredicted RBP13.99□□□□□ -0.17
SHANK1-201ENST00000293441 C1orf159Q96HA4 380 aa13.99□□□□□ -0.17
SHANK1-201ENST00000293441 IGHV2-70DA0A0C4DH43 119 aa13.99□□□□□ -0.17
SHANK1-201ENST00000293441 GATA4P43694 442 aa13.99□□□□□ -0.17
SHANK1-201ENST00000293441 OR2K2Q8NGT1 345 aa13.99□□□□□ -0.17
SHANK1-201ENST00000293441 FNDC4Q9H6D8 234 aaPredicted RBP13.99□□□□□ -0.17
SHANK1-201ENST00000293441 TRAV8-2A0A0B4J237 113 aa13.99□□□□□ -0.17
SHANK1-201ENST00000293441 A0A0G2JRQ6 117 aa13.99□□□□□ -0.17
SHANK1-201ENST00000293441 GATD1Q8NB37 220 aa13.99□□□□□ -0.17
SHANK1-201ENST00000293441 PAX4O43316 350 aa13.99□□□□□ -0.17
SHANK1-201ENST00000293441 IGFL3Q6UXB1 125 aa13.99□□□□□ -0.17
SHANK1-201ENST00000293441 C1orf122Q6ZSJ8 110 aa13.99□□□□□ -0.17
SHANK1-201ENST00000293441 A0A1W2PPI3 338 aa13.98□□□□□ -0.17
SHANK1-201ENST00000293441 C5orf30Q96GV9 206 aa13.98□□□□□ -0.17
SHANK1-201ENST00000293441 HELZP42694 1942 aaKnown RBP13.98□□□□□ -0.17
SHANK1-201ENST00000293441 GVINP1Q7Z2Y8 2422 aa13.98□□□□□ -0.17
SHANK1-201ENST00000293441 CYTL1Q9NRR1 136 aa13.98□□□□□ -0.17
SHANK1-201ENST00000293441 TRAV9-2A0A087WT02 112 aa13.98□□□□□ -0.17
SHANK1-201ENST00000293441 DOCK7Q96N67 2140 aa13.98□□□□□ -0.17
SHANK1-201ENST00000293441 M0R2P5 195 aa13.98□□□□□ -0.17
SHANK1-201ENST00000293441 TNFSF13O75888 250 aa13.98□□□□□ -0.17
SHANK1-201ENST00000293441 XCL2Q9UBD3 114 aa13.98□□□□□ -0.17
SHANK1-201ENST00000293441 VCYO14598 125 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 DMRTA1Q5VZB9 504 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 DUX4L9Q6RFH8 374 aaPredicted RBP13.97□□□□□ -0.17
SHANK1-201ENST00000293441 NUP35Q8NFH5 326 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 PRSS33Q8NF86 280 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 SLC25A2Q9BXI2 301 aa13.97□□□□□ -0.17
SHANK1-201ENST00000293441 SRSF4Q08170 494 aaKnown RBP13.97□□□□□ -0.17
SHANK1-201ENST00000293441 SRSF8Q9BRL6 282 aaKnown RBP13.97□□□□□ -0.17
SHANK1-201ENST00000293441 G3V318 75 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 115.3 ms