RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 Q8N2B8 174 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 MISP3Q96FF7 219 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 SMIM3Q9BZL3 60 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 LINC00587B1AMM8 73 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 BUB1B-PAK6H3BSN5 160 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 SYNGR2O43760 224 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 FCGR3BO75015 233 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 M6PRP20645 277 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 RPL27AP46776 148 aaKnown RBP4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 PDZD11Q5EBL8 140 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 C8orf31Q8N9H6 132 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 OR5T1Q8NG75 326 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 OSR1Q8TAX0 266 aaPredicted RBP4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 PXMP4Q9Y6I8 212 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 MUC17Q685J3 4493 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 CLDN34H7C241 214 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 KBTBD11O94819 623 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 CIRBPQ14011 172 aaKnown RBP4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 TMEM78Q5T7P6 136 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 C16orf54Q6UWD8 224 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 PQLC2Q6ZP29 291 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 ZNF680Q8NEM1 530 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 AQP10Q96PS8 301 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 MAGT1Q9H0U3 335 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 RBKSQ9H477 322 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 RABAC1Q9UI14 185 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 MOB4Q9Y3A3 225 aa4.3□□□□□ -1.72
TOPBP1-201ENST00000260810 INS-IGF2F8WCM5 200 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 IGLV1-40P01703 118 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 TMEM11P17152 192 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 KRTDAPP60985 99 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 REC114Q7Z4M0 266 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 OR2C3Q8N628 320 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 CCL17Q92583 94 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 URB1-AS1Q96HZ7 61 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 CBLN4Q9NTU7 201 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 VAX2Q9UIW0 290 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 P01737 135 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 FCER1GP30273 86 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 SNRPEP62304 92 aaKnown RBP4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 CLLU1Q5K131 121 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 UNQ9165/PRO28630Q6UXU0 137 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 OR1B1Q8NGR6 318 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 DTD1Q8TEA8 209 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 ASCL2Q99929 193 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 MAP1LC3CQ9BXW4 147 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 ZNF430Q9H8G1 570 aaPredicted RBP4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 DOK5Q9P104 306 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 J3QLI3 93 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 SCO1O75880 301 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 ZP3P21754 424 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 DEFA6Q01524 100 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 SPINK9Q5DT21 86 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 MINOS1Q5TGZ0 78 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 C16orf82Q7Z2V1 217 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 OR10G4Q8NGN3 311 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 MARVELD3Q96A59 401 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 MGST2Q99735 147 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 NPVFQ9HCQ7 196 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 CALYQ9NYX4 217 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 SIGLEC9Q9Y336 463 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 OR51B2Q9Y5P1 312 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 PUS1Q9Y606 427 aaKnown RBP eCLIP4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 MINOS1-NBL1R4GNA1 71 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 TMEM218A2RU14 115 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 ZNF705GA8MUZ8 300 aaPredicted RBP4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 COX6CP09669 75 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 REG1BP48304 166 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 ERVFC1-1P60608 527 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 GDF5OSQ5U4N7 250 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 HARBI1Q96MB7 349 aa4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 TIMM8BQ9Y5J9 83 aaPredicted RBP4.29□□□□□ -1.72
TOPBP1-201ENST00000260810 TRAV20A0A0B4J274 112 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 MAP1LC3B2A6NCE7 125 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 VENTXO95231 258 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 PF4P02776 101 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 NPY1RP25929 384 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 UBE2L3P68036 154 aaKnown RBP4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 TMEM183BQ1AE95 376 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 PRR9Q5T870 116 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 BRD3OSQ6XYD6 125 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 C9orf139Q6ZV77 190 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 BPIFA4PQ86YQ2 179 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 TMEM217Q8N7C4 229 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 RNF152Q8N8N0 203 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 RNASEH2CQ8TDP1 164 aaKnown RBP4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 ACY3Q96HD9 319 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 MAP1LC3BQ9GZQ8 125 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 SLC35B3Q9H1N7 401 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 PARP11Q9NR21 331 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 C11orf21Q9P2W6 132 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 A6NDN8 102 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 ITGB1BP1O14713 200 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 RPLP1P05386 114 aaKnown RBP4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 RNASE2P10153 161 aaKnown RBP4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 GATA2P23769 480 aaPredicted RBP4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 B2MP61769 119 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 RPL31P62899 125 aaKnown RBP4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 GBGT1Q8N5D6 347 aa4.28□□□□□ -1.72
TOPBP1-201ENST00000260810 OR10G7Q8NGN6 311 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms