RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	IMP2'	P32351	346 aa		4.56	□□□□□ -1.68
CTK1	YKL139W	BCS1	P32839	456 aa		4.56	□□□□□ -1.68
CTK1	YKL139W	LST4	P34239	828 aa		4.56	□□□□□ -1.68
CTK1	YKL139W	AIM3	P38266	947 aa	Known RBP	4.56	□□□□□ -1.68
CTK1	YKL139W	NUP60	P39705	539 aa		4.56	□□□□□ -1.68
CTK1	YKL139W	DPH1	P40487	425 aa	Known RBP	4.56	□□□□□ -1.68
CTK1	YKL139W	POL31	P46957	487 aa		4.56	□□□□□ -1.68
CTK1	YKL139W	CTF18	P49956	741 aa		4.56	□□□□□ -1.68
CTK1	YKL139W	MUP1	P50276	574 aa		4.56	□□□□□ -1.68
CTK1	YKL139W	INP52	P50942	1183 aa		4.56	□□□□□ -1.68
CTK1	YKL139W	SAP4	P53036	818 aa		4.56	□□□□□ -1.68
CTK1	YKL139W	ESF2	P53743	316 aa	Known RBP	4.56	□□□□□ -1.68
CTK1	YKL139W	FDC1	Q03034	503 aa		4.56	□□□□□ -1.68
CTK1	YKL139W	CSR1	Q06705	408 aa	Known RBP	4.56	□□□□□ -1.68
CTK1	YKL139W	ENB1	Q08299	606 aa		4.56	□□□□□ -1.68
CTK1	YKL139W	SOD2	P00447	233 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	TUF1	P02992	437 aa	Known RBP	4.55	□□□□□ -1.68
CTK1	YKL139W	BET2	P20133	325 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	MVD1	P32377	396 aa	Known RBP	4.55	□□□□□ -1.68
CTK1	YKL139W	MRPL36	P36531	177 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	STB5	P38699	743 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	NPR3	P38742	1146 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	UME6	P39001	836 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	YER010C	P40011	234 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	VFA1	P40080	203 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	CAB2	P40506	365 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	RFX1	P48743	811 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	AMA1	P50082	593 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	TRS31	Q03337	283 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	GIR2	Q03768	265 aa	Predicted RBP	4.55	□□□□□ -1.68
CTK1	YKL139W	TMA10	Q06177	86 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	ICL2	Q12031	575 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	ENT1	Q12518	454 aa		4.55	□□□□□ -1.68
CTK1	YKL139W	YCR015C	P25616	317 aa		4.54	□□□□□ -1.68
CTK1	YKL139W	RPS7A	P26786	190 aa	Known RBP	4.54	□□□□□ -1.68
CTK1	YKL139W	ARP2	P32381	391 aa	Known RBP	4.54	□□□□□ -1.68
CTK1	YKL139W	TSA1	P34760	196 aa	Known RBP	4.54	□□□□□ -1.68
CTK1	YKL139W	YBR053C	P38235	358 aa		4.54	□□□□□ -1.68
CTK1	YKL139W	YEL068C	P39977	110 aa		4.54	□□□□□ -1.68
CTK1	YKL139W	TMN3	P40071	706 aa		4.54	□□□□□ -1.68
CTK1	YKL139W	IMA1	P53051	589 aa		4.54	□□□□□ -1.68
CTK1	YKL139W	YRB30	P53107	440 aa	Predicted RBP	4.54	□□□□□ -1.68
CTK1	YKL139W	CBK1	P53894	756 aa		4.54	□□□□□ -1.68
CTK1	YKL139W	VPS64	Q03944	604 aa		4.54	□□□□□ -1.68
CTK1	YKL139W	DLT1	Q04216	342 aa		4.54	□□□□□ -1.68
CTK1	YKL139W	TSR2	Q06672	205 aa	Known RBP	4.54	□□□□□ -1.68
CTK1	YKL139W	TRP4	P07285	380 aa	Predicted RBP	4.53	□□□□□ -1.68
CTK1	YKL139W	MET3	P08536	511 aa		4.53	□□□□□ -1.68
CTK1	YKL139W	SEC12	P11655	471 aa		4.53	□□□□□ -1.68
CTK1	YKL139W	CAF20	P12962	161 aa	Known RBP	4.53	□□□□□ -1.68
CTK1	YKL139W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.53	□□□□□ -1.68	not detected
CTK1	YKL139W	GAS1	P22146	559 aa	Known RBP	4.53	□□□□□ -1.68
CTK1	YKL139W	RAD16	P31244	790 aa		4.53	□□□□□ -1.68
CTK1	YKL139W	DCG1	P32460	244 aa		4.53	□□□□□ -1.68
CTK1	YKL139W	JNM1	P36224	373 aa		4.53	□□□□□ -1.68
CTK1	YKL139W	VPS8	P39702	1274 aa		4.53	□□□□□ -1.68
CTK1	YKL139W	PIG2	P40187	538 aa		4.53	□□□□□ -1.68
CTK1	YKL139W	ESL1	P40456	1118 aa		4.53	□□□□□ -1.68
CTK1	YKL139W	ADY4	Q05955	493 aa		4.53	□□□□□ -1.68
CTK1	YKL139W	CHS5	Q12114	671 aa	Known RBP	4.53	□□□□□ -1.68
CTK1	YKL139W	AAC3	P18238	307 aa		4.53	□□□□□ -1.69
CTK1	YKL139W	PAH1	P32567	862 aa		4.53	□□□□□ -1.69
CTK1	YKL139W	TEF4	P36008	412 aa	Known RBP	4.53	□□□□□ -1.69
CTK1	YKL139W	BCD1	P38772	366 aa		4.53	□□□□□ -1.69
CTK1	YKL139W	FSH1	P38777	243 aa	Known RBP	4.53	□□□□□ -1.69
CTK1	YKL139W	ELO3	P40319	345 aa		4.53	□□□□□ -1.69
CTK1	YKL139W	UPF3	P48412	387 aa	Known RBP	4.53	□□□□□ -1.69
CTK1	YKL139W	RIM8	P53179	542 aa		4.53	□□□□□ -1.69
CTK1	YKL139W	ATG21	Q02887	496 aa		4.53	□□□□□ -1.69
CTK1	YKL139W	CDA2	Q06703	312 aa		4.53	□□□□□ -1.69
CTK1	YKL139W	PCD1	Q12524	340 aa		4.53	□□□□□ -1.69
CTK1	YKL139W	CTT1	P06115	562 aa		4.52	□□□□□ -1.69
CTK1	YKL139W	CDC31	P06704	161 aa	Known RBP	4.52	□□□□□ -1.69
CTK1	YKL139W	VPS33	P20795	691 aa		4.52	□□□□□ -1.69
CTK1	YKL139W	TOD6	P34219	525 aa		4.52	□□□□□ -1.69
CTK1	YKL139W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.52	□□□□□ -1.69	not detected
CTK1	YKL139W	NOP16	P40007	231 aa	Known RBP	4.52	□□□□□ -1.69
CTK1	YKL139W	LRO1	P40345	661 aa		4.52	□□□□□ -1.69
CTK1	YKL139W	BST1	P43571	1029 aa		4.52	□□□□□ -1.69
CTK1	YKL139W	UBC11	P52492	156 aa		4.52	□□□□□ -1.69
CTK1	YKL139W	SNO4	Q04902	237 aa		4.52	□□□□□ -1.69
CTK1	YKL139W	HSP33	Q08914	237 aa	Known RBP	4.52	□□□□□ -1.69
CTK1	YKL139W	HSP32	Q08992	237 aa		4.52	□□□□□ -1.69
CTK1	YKL139W	COX17	Q12287	69 aa		4.52	□□□□□ -1.69
CTK1	YKL139W	ZRT2	Q12436	422 aa		4.52	□□□□□ -1.69
CTK1	YKL139W	TPK1	P06244	397 aa		4.51	□□□□□ -1.69
CTK1	YKL139W	BIK1	P11709	440 aa		4.51	□□□□□ -1.69
CTK1	YKL139W	PRP28	P23394	588 aa		4.51	□□□□□ -1.69
CTK1	YKL139W	PRE2	P30656	287 aa	Known RBP	4.51	□□□□□ -1.69
CTK1	YKL139W	MSS1	P32559	526 aa	Predicted RBP	4.51	□□□□□ -1.69
CTK1	YKL139W	CNS1	P33313	385 aa		4.51	□□□□□ -1.69
CTK1	YKL139W	YJL193W	P39542	402 aa		4.51	□□□□□ -1.69
CTK1	YKL139W	YEL025C	P39991	1188 aa		4.51	□□□□□ -1.69
CTK1	YKL139W	MPS3	P47069	682 aa		4.51	□□□□□ -1.69
CTK1	YKL139W	BUL1	P48524	976 aa		4.51	□□□□□ -1.69
CTK1	YKL139W	PSP1	P50896	841 aa	Known RBP	4.51	□□□□□ -1.69
CTK1	YKL139W	PAN2	P53010	1115 aa	Predicted RBP	4.51	□□□□□ -1.69
CTK1	YKL139W	MCM6	P53091	1017 aa	Known RBP	4.51	□□□□□ -1.69
CTK1	YKL139W	YGR054W	P53235	642 aa	Known RBP	4.51	□□□□□ -1.69
CTK1	YKL139W	ARR3	Q06598	404 aa		4.51	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms