RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W AXL2P38928 823 aa6.36□□□□□ -1.39
PRP40YKL012W HOS4P40480 1083 aa6.36□□□□□ -1.39
PRP40YKL012W AIM21P40563 679 aa6.36□□□□□ -1.39
PRP40YKL012W INP52P50942 1183 aa6.36□□□□□ -1.39
PRP40YKL012W RRT6P53117 311 aaPredicted RBP6.36□□□□□ -1.39
PRP40YKL012W GIR2Q03768 265 aaPredicted RBP6.36□□□□□ -1.39
PRP40YKL012W TSR2Q06672 205 aaKnown RBP6.36□□□□□ -1.39
PRP40YKL012W FEN2P25621 512 aaKnown RBP6.36□□□□□ -1.39
PRP40YKL012W LST4P34239 828 aa6.36□□□□□ -1.39
PRP40YKL012W TSA1P34760 196 aaKnown RBP6.36□□□□□ -1.39
PRP40YKL012W EHT1P38295 451 aa6.36□□□□□ -1.39
PRP40YKL012W YER010CP40011 234 aa6.36□□□□□ -1.39
PRP40YKL012W YIL077CP40508 320 aa6.36□□□□□ -1.39
PRP40YKL012W SAP4P53036 818 aa6.36□□□□□ -1.39
PRP40YKL012W TRP4P07285 380 aaPredicted RBP6.35□□□□□ -1.39
PRP40YKL012W GUK1P15454 187 aaKnown RBP6.35□□□□□ -1.39
PRP40YKL012W PRP45P28004 379 aaPredicted RBP6.35□□□□□ -1.39
PRP40YKL012W BCS1P32839 456 aa6.35□□□□□ -1.39
PRP40YKL012W SET3P36124 751 aa6.35□□□□□ -1.39
PRP40YKL012W OMA1P36163 345 aa6.35□□□□□ -1.39
PRP40YKL012W VFA1P40080 203 aa6.35□□□□□ -1.39
PRP40YKL012W CAB2P40506 365 aa6.35□□□□□ -1.39
PRP40YKL012W ADY4Q05955 493 aa6.35□□□□□ -1.39
PRP40YKL012W RGC1Q06108 1083 aaKnown RBP6.35□□□□□ -1.39
PRP40YKL012W BIK1P11709 440 aa6.34□□□□□ -1.39
PRP40YKL012W BET2P20133 325 aa6.34□□□□□ -1.39
PRP40YKL012W DCG1P32460 244 aa6.34□□□□□ -1.39
PRP40YKL012W MUD2P36084 527 aaKnown RBP6.34□□□□□ -1.39
PRP40YKL012W JNM1P36224 373 aa6.34□□□□□ -1.39
PRP40YKL012W FSH1P38777 243 aaKnown RBP6.34□□□□□ -1.39
PRP40YKL012W UME6P39001 836 aa6.34□□□□□ -1.39
PRP40YKL012W DPH1P40487 425 aaKnown RBP6.34□□□□□ -1.39
PRP40YKL012W SAN1P22470 610 aa6.34□□□□□ -1.4
PRP40YKL012W YBR053CP38235 358 aa6.34□□□□□ -1.4
PRP40YKL012W NOP16P40007 231 aaKnown RBP6.34□□□□□ -1.4
PRP40YKL012W SRB7P47822 140 aa6.34□□□□□ -1.4
PRP40YKL012W MUP1P50276 574 aa6.34□□□□□ -1.4
PRP40YKL012W TRS31Q03337 283 aa6.34□□□□□ -1.4
PRP40YKL012W VPS64Q03944 604 aa6.34□□□□□ -1.4
PRP40YKL012W DLT1Q04216 342 aa6.34□□□□□ -1.4
PRP40YKL012W ENT1Q12518 454 aa6.34□□□□□ -1.4
PRP40YKL012W CDC31P06704 161 aaKnown RBP6.33□□□□□ -1.4
PRP40YKL012W SEC12P11655 471 aa6.33□□□□□ -1.4
PRP40YKL012W ARP2P32381 391 aaKnown RBP6.33□□□□□ -1.4
PRP40YKL012W CBF2P32504 956 aa6.33□□□□□ -1.4
PRP40YKL012W AIM3P38266 947 aaKnown RBP6.33□□□□□ -1.4
PRP40YKL012W VPS8P39702 1274 aa6.33□□□□□ -1.4
PRP40YKL012W PIG2P40187 538 aa6.33□□□□□ -1.4
PRP40YKL012W ESL1P40456 1118 aa6.33□□□□□ -1.4
PRP40YKL012W BST1P43571 1029 aa6.33□□□□□ -1.4
PRP40YKL012W CBK1P53894 756 aa6.33□□□□□ -1.4
PRP40YKL012W TIM50Q02776 476 aa6.33□□□□□ -1.4
PRP40YKL012W SDH5Q08230 162 aa6.33□□□□□ -1.4
PRP40YKL012W MET3P08536 511 aa6.32□□□□□ -1.4
PRP40YKL012W CAF20P12962 161 aaKnown RBP6.32□□□□□ -1.4
PRP40YKL012W PFK2P16862 959 aaKnown RBP RIP-Chip data6.32□□□□□ -1.4not detected
PRP40YKL012W VPS33P20795 691 aa6.32□□□□□ -1.4
PRP40YKL012W PRP28P23394 588 aa6.32□□□□□ -1.4
PRP40YKL012W YCR015CP25616 317 aa6.32□□□□□ -1.4
PRP40YKL012W PAH1P32567 862 aa6.32□□□□□ -1.4
PRP40YKL012W UPF3P48412 387 aaKnown RBP6.32□□□□□ -1.4
PRP40YKL012W RFX1P48743 811 aa6.32□□□□□ -1.4
PRP40YKL012W RIM8P53179 542 aa6.32□□□□□ -1.4
PRP40YKL012W ATG21Q02887 496 aa6.32□□□□□ -1.4
PRP40YKL012W STE11P23561 717 aa6.31□□□□□ -1.4
PRP40YKL012W RAD16P31244 790 aa6.31□□□□□ -1.4
PRP40YKL012W MVD1P32377 396 aaKnown RBP6.31□□□□□ -1.4
PRP40YKL012W ELO3P40319 345 aa6.31□□□□□ -1.4
PRP40YKL012W LRO1P40345 661 aa6.31□□□□□ -1.4
PRP40YKL012W TMA10Q06177 86 aa6.31□□□□□ -1.4
PRP40YKL012W ARR3Q06598 404 aa6.31□□□□□ -1.4
PRP40YKL012W IMH1Q06704 911 aaKnown RBP6.31□□□□□ -1.4
PRP40YKL012W ICL2Q12031 575 aa6.31□□□□□ -1.4
PRP40YKL012W CHS5Q12114 671 aaKnown RBP6.31□□□□□ -1.4
PRP40YKL012W TEF4P36008 412 aaKnown RBP6.31□□□□□ -1.4
PRP40YKL012W TMN3P40071 706 aa6.31□□□□□ -1.4
PRP40YKL012W TEL2P53038 688 aa6.31□□□□□ -1.4
PRP40YKL012W CDA2Q06703 312 aa6.31□□□□□ -1.4
PRP40YKL012W AIM6Q07716 390 aa6.31□□□□□ -1.4
PRP40YKL012W FUM1P08417 488 aaKnown RBP6.3□□□□□ -1.4
PRP40YKL012W AAC3P18238 307 aa6.3□□□□□ -1.4
PRP40YKL012W PRE10P21242 288 aaKnown RBP RIP-Chip data6.3□□□□□ -1.4not detected
PRP40YKL012W RPS7AP26786 190 aaKnown RBP6.3□□□□□ -1.4
PRP40YKL012W MSS1P32559 526 aaPredicted RBP6.3□□□□□ -1.4
PRP40YKL012W STB5P38699 743 aa6.3□□□□□ -1.4
PRP40YKL012W BCD1P38772 366 aa6.3□□□□□ -1.4
PRP40YKL012W YJL193WP39542 402 aa6.3□□□□□ -1.4
PRP40YKL012W YEL068CP39977 110 aa6.3□□□□□ -1.4
PRP40YKL012W YEL025CP39991 1188 aa6.3□□□□□ -1.4
PRP40YKL012W RIC1P40395 1056 aa6.3□□□□□ -1.4
PRP40YKL012W PSP1P50896 841 aaKnown RBP6.3□□□□□ -1.4
PRP40YKL012W UBC11P52492 156 aa6.3□□□□□ -1.4
PRP40YKL012W CTT1P06115 562 aa6.29□□□□□ -1.4
PRP40YKL012W ZRT2Q12436 422 aa6.29□□□□□ -1.4
PRP40YKL012W GAS1P22146 559 aaKnown RBP6.29□□□□□ -1.4
PRP40YKL012W HRB1P38922 454 aaKnown RBP RIP-Chip data6.29□□□□□ -1.4not detected
PRP40YKL012W BUL1P48524 976 aa6.29□□□□□ -1.4
PRP40YKL012W COS12P53053 380 aa6.29□□□□□ -1.4
PRP40YKL012W YGR054WP53235 642 aaKnown RBP6.29□□□□□ -1.4
PRP40YKL012W SNO4Q04902 237 aa6.29□□□□□ -1.4
Retrieved 100 of 5,963 RNA–protein pairs in 12.9 ms