RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	NHX1	Q04121	633 aa		4.79	□□□□□ -1.64
UBC8	YEL012W	TFC6	Q06339	672 aa		4.79	□□□□□ -1.64
UBC8	YEL012W	WHI4	Q07655	649 aa	Known RBP	4.79	□□□□□ -1.64
UBC8	YEL012W	BRE4	Q07660	1125 aa		4.79	□□□□□ -1.64
UBC8	YEL012W	ADY3	Q07732	790 aa		4.79	□□□□□ -1.64
UBC8	YEL012W	HAL9	Q12180	1030 aa		4.79	□□□□□ -1.64
UBC8	YEL012W	YOR022C	Q12204	715 aa		4.79	□□□□□ -1.64
UBC8	YEL012W	PGA3	Q12746	312 aa	Known RBP	4.79	□□□□□ -1.64
UBC8	YEL012W	YOR111W	Q99210	232 aa		4.79	□□□□□ -1.64
UBC8	YEL012W	TY1B-A	O13527	1196 aa	Known RBP	4.78	□□□□□ -1.64
UBC8	YEL012W	DIF1	O13577	133 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	SPE1	P08432	466 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	UBP11	P36026	717 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	SLX1	P38324	304 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	STB5	P38699	743 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	SET5	P38890	526 aa	Known RBP	4.78	□□□□□ -1.64
UBC8	YEL012W	CKB2	P38930	258 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	PES4	P39684	611 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	PSP2	P50109	593 aa	Known RBP	4.78	□□□□□ -1.64
UBC8	YEL012W	UBC9	P50623	157 aa	Predicted RBP	4.78	□□□□□ -1.64
UBC8	YEL012W	TPO1	Q07824	586 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	SGO1	Q08490	590 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	DSE3	Q08729	430 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	RIM20	Q12033	661 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	FAP7	Q12055	197 aa	Predicted RBP	4.78	□□□□□ -1.64
UBC8	YEL012W	ARP6	Q12509	438 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	YLR149C	Q99296	730 aa		4.78	□□□□□ -1.64
UBC8	YEL012W	RPS9A	O13516	197 aa	Known RBP	4.77	□□□□□ -1.65
UBC8	YEL012W	CDC6	P09119	513 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	CDC16	P09798	840 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	ENA1	P13587	1091 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	MSS51	P32335	436 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	IMP2'	P32351	346 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	PRP19	P32523	503 aa	Known RBP	4.77	□□□□□ -1.65
UBC8	YEL012W	SUL1	P38359	859 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	YIL108W	P40483	696 aa	Known RBP	4.77	□□□□□ -1.65
UBC8	YEL012W	COG6	P53959	839 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	ENA2	Q01896	1091 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	MUK1	Q02866	612 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	HFD1	Q04458	532 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	NKP2	Q06162	153 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	SPN1	Q06505	410 aa	Predicted RBP	4.77	□□□□□ -1.65
UBC8	YEL012W	VIP1	Q06685	1146 aa	Known RBP	4.77	□□□□□ -1.65
UBC8	YEL012W	ENA5	Q12691	1091 aa		4.77	□□□□□ -1.65
UBC8	YEL012W	MBR1	P23493	339 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	ADK2	P26364	225 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	STE14	P32584	239 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	4.76	□□□□□ -1.65	not detected
UBC8	YEL012W	DID4	P36108	232 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	YKR051W	P36142	418 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	OMA1	P36163	345 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	TVP38	P36164	337 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	RFS1	P38234	210 aa	Known RBP	4.76	□□□□□ -1.65
UBC8	YEL012W	HSL7	P38274	827 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	CTF8	P38877	133 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	RPN10	P38886	268 aa	Known RBP	4.76	□□□□□ -1.65
UBC8	YEL012W	URM1	P40554	99 aa	Predicted RBP	4.76	□□□□□ -1.65
UBC8	YEL012W	ZIP2	P53061	704 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	SKY1	Q03656	742 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	YLR455W	Q06188	304 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	Q0142	Q9ZZW4	58 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	IRA2	P19158	3079 aa		4.76	□□□□□ -1.65
UBC8	YEL012W	POL3	P15436	1097 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	PEX1	P24004	1043 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	SYN8	P31377	255 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	PEX2	P32800	271 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	YKL097C	P34245	136 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	GCS1	P35197	352 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	AAP1	P37898	856 aa	Known RBP	4.75	□□□□□ -1.65
UBC8	YEL012W	YBR071W	P38243	211 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	CRG1	P38892	291 aa	RIP-Chip data	4.75	□□□□□ -1.65	not detected
UBC8	YEL012W	OAF1	P39720	1047 aa	Predicted RBP	4.75	□□□□□ -1.65
UBC8	YEL012W	YEL025C	P39991	1188 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	SDP1	P40479	209 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	YIR016W	P40572	265 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	YFL052W	P43551	465 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	GCV2	P49095	1034 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	ART5	P53244	586 aa	Known RBP	4.75	□□□□□ -1.65
UBC8	YEL012W	PEX8	P53248	589 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	ORC4	P54791	529 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	ROT1	Q03691	256 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	YDR132C	Q03900	495 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	CRD1	Q07560	283 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	IRC10	Q08118	586 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	UPC2	Q12151	913 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	CLF1	Q12309	687 aa	Predicted RBP	4.75	□□□□□ -1.65
UBC8	YEL012W	GPR1	Q12361	961 aa		4.75	□□□□□ -1.65
UBC8	YEL012W	UBC1	P21734	215 aa	Known RBP	4.74	□□□□□ -1.65
UBC8	YEL012W	PWP2	P25635	923 aa	Known RBP	4.74	□□□□□ -1.65
UBC8	YEL012W	LRG1	P35688	1017 aa		4.74	□□□□□ -1.65
UBC8	YEL012W	SAP190	P36123	1033 aa		4.74	□□□□□ -1.65
UBC8	YEL012W	APN2	P38207	520 aa		4.74	□□□□□ -1.65
UBC8	YEL012W	LAM1	P38851	1228 aa		4.74	□□□□□ -1.65
UBC8	YEL012W	GZF3	P42944	551 aa	Known RBP	4.74	□□□□□ -1.65
UBC8	YEL012W	MET12	P46151	657 aa		4.74	□□□□□ -1.65
UBC8	YEL012W	BNA2	P47125	453 aa		4.74	□□□□□ -1.65
UBC8	YEL012W	CRR1	Q05790	422 aa		4.74	□□□□□ -1.65
UBC8	YEL012W	PIG1	Q06216	648 aa		4.74	□□□□□ -1.65
UBC8	YEL012W	YTM1	Q12024	460 aa	Predicted RBP	4.74	□□□□□ -1.65
UBC8	YEL012W	HMI1	Q12039	706 aa		4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 161.8 ms