RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 MYH7P12883 1935 aa17.29■□□□□ 0.36
CLN3-253ENST00000636977 PDE8BO95263 885 aa17.29■□□□□ 0.36
CLN3-253ENST00000636977 YEATS4O95619 227 aa17.29■□□□□ 0.36
CLN3-253ENST00000636977 SH2B2O14492 632 aaPredicted RBP17.28■□□□□ 0.36
CLN3-253ENST00000636977 CYP19A1P11511 503 aaPredicted RBP17.28■□□□□ 0.36
CLN3-253ENST00000636977 METAP2P50579 478 aaKnown RBP eCLIP17.28■□□□□ 0.36
CLN3-253ENST00000636977 CTDSPL2Q05D32 466 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 TRDNQ13061 729 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 UBN2Q6ZU65 1347 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 APOA5Q6Q788 366 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 CLIC6Q96NY7 704 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 CGNQ9P2M7 1197 aaKnown RBP17.28■□□□□ 0.36
CLN3-253ENST00000636977 C4AP0C0L4 1744 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 C4BP0C0L5 1744 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.28■□□□□ 0.36
CLN3-253ENST00000636977 TCRBV5S4A2TA0A5A2 114 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 RANBP6O60518 1105 aaKnown RBP17.28■□□□□ 0.36
CLN3-253ENST00000636977 NCBP1Q09161 790 aaKnown RBP17.28■□□□□ 0.36
CLN3-253ENST00000636977 KRT40Q6A162 431 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 BRAPQ7Z569 592 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 VPS37DQ86XT2 251 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 EPB41L4AQ9HCS5 686 aaPredicted RBP17.28■□□□□ 0.36
CLN3-253ENST00000636977 BTG4Q9NY30 223 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 ZMYM6O95789 1325 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 CDHR2Q9BYE9 1310 aa17.28■□□□□ 0.36
CLN3-253ENST00000636977 DDX60Q8IY21 1712 aaKnown RBP17.27■□□□□ 0.36
CLN3-253ENST00000636977 SPDYE4A6NLX3 237 aa17.27■□□□□ 0.36
CLN3-253ENST00000636977 SLC3A2P08195 630 aaKnown RBP17.27■□□□□ 0.36
CLN3-253ENST00000636977 ANKRD7Q92527 254 aa17.27■□□□□ 0.36
CLN3-253ENST00000636977 XPO4Q9C0E2 1151 aaKnown RBP17.27■□□□□ 0.36
CLN3-253ENST00000636977 IGDCC4Q8TDY8 1250 aa17.27■□□□□ 0.35
CLN3-253ENST00000636977 ZNF335Q9H4Z2 1342 aaPredicted RBP17.27■□□□□ 0.35
CLN3-253ENST00000636977 FAM217BQ9NTX9 383 aaPredicted RBP17.27■□□□□ 0.35
CLN3-253ENST00000636977 IFNKQ9P0W0 207 aa17.27■□□□□ 0.35
CLN3-253ENST00000636977 RBM6P78332 1123 aaKnown RBP17.26■□□□□ 0.35
CLN3-253ENST00000636977 PTPN21Q16825 1174 aa17.26■□□□□ 0.35
CLN3-253ENST00000636977 PDCL2Q8N4E4 241 aa17.26■□□□□ 0.35
CLN3-253ENST00000636977 STRBPQ96SI9 672 aaKnown RBP17.26■□□□□ 0.35
CLN3-253ENST00000636977 TEX13AQ9BXU3 409 aaPredicted RBP17.26■□□□□ 0.35
CLN3-253ENST00000636977 PRKAB2O43741 272 aa17.26■□□□□ 0.35
CLN3-253ENST00000636977 SMC2O95347 1197 aa17.26■□□□□ 0.35
CLN3-253ENST00000636977 U2AF2P26368 475 aaKnown RBP eCLIP17.26■□□□□ 0.35
CLN3-253ENST00000636977 SHC4Q6S5L8 630 aa17.26■□□□□ 0.35
CLN3-253ENST00000636977 CHMP4CQ96CF2 233 aa17.26■□□□□ 0.35
CLN3-253ENST00000636977 SMTNL1A8MU46 457 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 NCAPHQ15003 741 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 SLC39A14Q15043 492 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 CEP135Q66GS9 1140 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 NAT10Q9H0A0 1025 aaKnown RBP17.25■□□□□ 0.35
CLN3-253ENST00000636977 ARMT1Q9H993 441 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 ABCC12Q96J65 1359 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 ATP1A3P13637 1013 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 UBE3CQ15386 1083 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 NTRK3Q16288 839 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 NFXL1Q6ZNB6 911 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 MAGEB6Q8N7X4 407 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 AIDAQ96BJ3 306 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 ZKSCAN3Q9BRR0 538 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 LY9Q9HBG7 655 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 SEC31BQ9NQW1 1179 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 CMA1P23946 247 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 LMOD1P29536 600 aaPredicted RBP17.25■□□□□ 0.35
CLN3-253ENST00000636977 SPECC1Q5M775 1068 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 ZSWIM5Q9P217 1185 aa17.25■□□□□ 0.35
CLN3-253ENST00000636977 MBD4O95243 580 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 GUCY1A2P33402 732 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 RASGRF1Q13972 1273 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 PTPAQ15257 358 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 ZRSR1Q15695 479 aaKnown RBP17.24■□□□□ 0.35
CLN3-253ENST00000636977 DZIP3Q86Y13 1208 aaKnown RBP17.24■□□□□ 0.35
CLN3-253ENST00000636977 CMTR1Q8N1G2 835 aaKnown RBP17.24■□□□□ 0.35
CLN3-253ENST00000636977 ABCA3Q99758 1704 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 SLIT2O94813 1529 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 PDE8AO60658 829 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 ARID4AP29374 1257 aaPredicted RBP17.24■□□□□ 0.35
CLN3-253ENST00000636977 NLRP12P59046 1061 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 PNOCQ13519 176 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 TMEM67Q5HYA8 995 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 ARMCX5Q6P1M9 558 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 TMC6Q7Z403 805 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 CCDC82Q8N4S0 544 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 HSD3B7Q9H2F3 369 aa17.24■□□□□ 0.35
CLN3-253ENST00000636977 WDR19Q8NEZ3 1342 aa17.23■□□□□ 0.35
CLN3-253ENST00000636977 ZBTB43O43298 467 aa17.23■□□□□ 0.35
CLN3-253ENST00000636977 TTF1Q15361 905 aaPredicted RBP17.23■□□□□ 0.35
CLN3-253ENST00000636977 NYAP1Q6ZVC0 841 aa17.23■□□□□ 0.35
CLN3-253ENST00000636977 ZNF512BQ96KM6 892 aaPredicted RBP17.23■□□□□ 0.35
CLN3-253ENST00000636977 MAP3K14Q99558 947 aa17.23■□□□□ 0.35
CLN3-253ENST00000636977 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.23■□□□□ 0.35
CLN3-253ENST00000636977 V9GYY5 206 aaPredicted RBP17.23■□□□□ 0.35
CLN3-253ENST00000636977 ITGB4P16144 1822 aa17.23■□□□□ 0.35
CLN3-253ENST00000636977 GOLGA8AA7E2F4 631 aa17.23■□□□□ 0.35
CLN3-253ENST00000636977 SMIM22K7EJ46 135 aa17.23■□□□□ 0.35
CLN3-253ENST00000636977 GNL2Q13823 731 aaKnown RBP17.23■□□□□ 0.35
CLN3-253ENST00000636977 IFNL3Q8IZI9 196 aa17.23■□□□□ 0.35
CLN3-253ENST00000636977 SPATA5Q8NB90 893 aa17.23■□□□□ 0.35
CLN3-253ENST00000636977 CCDC112Q8NEF3 446 aa17.23■□□□□ 0.35
CLN3-253ENST00000636977 ATRNO75882 1429 aa17.23■□□□□ 0.35
CLN3-253ENST00000636977 FGFR2P21802 821 aa17.22■□□□□ 0.35
CLN3-253ENST00000636977 SYKP43405 635 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms