RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 ZNF341Q9BYN7 854 aa16.92■□□□□ 0.3
TRIM28-211ENST00000597968 EFCC1Q9HA90 598 aa16.92■□□□□ 0.3
TRIM28-211ENST00000597968 PTPN22Q9Y2R2 807 aa16.92■□□□□ 0.3
TRIM28-211ENST00000597968 OTOFQ9HC10 1997 aa16.91■□□□□ 0.3
TRIM28-211ENST00000597968 SLC34A2O95436 690 aa16.91■□□□□ 0.3
TRIM28-211ENST00000597968 PPIL2Q13356 520 aa16.91■□□□□ 0.3
TRIM28-211ENST00000597968 SNAPC2Q13487 334 aa16.91■□□□□ 0.3
TRIM28-211ENST00000597968 CDAN1Q8IWY9 1227 aa16.91■□□□□ 0.3
TRIM28-211ENST00000597968 BRI3BPQ8WY22 251 aa16.91■□□□□ 0.3
TRIM28-211ENST00000597968 AKAP2Q9Y2D5 859 aa16.91■□□□□ 0.3
TRIM28-211ENST00000597968 LRRFIP2Q9Y608 721 aaKnown RBP16.91■□□□□ 0.3
TRIM28-211ENST00000597968 SNCAIPQ9Y6H5 919 aa16.91■□□□□ 0.3
TRIM28-211ENST00000597968 GNRH1P01148 92 aa16.9■□□□□ 0.3
TRIM28-211ENST00000597968 TAF1CQ15572 869 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-211ENST00000597968 PRPF38BQ5VTL8 546 aaKnown RBP16.9■□□□□ 0.3
TRIM28-211ENST00000597968 OTUD5Q96G74 571 aa16.9■□□□□ 0.3
TRIM28-211ENST00000597968 SIL1Q9H173 461 aa16.9■□□□□ 0.3
TRIM28-211ENST00000597968 ZNF112Q9UJU3 913 aa16.9■□□□□ 0.3
TRIM28-211ENST00000597968 DAGLAQ9Y4D2 1042 aa16.9■□□□□ 0.3
TRIM28-211ENST00000597968 CACNB3P54284 484 aa16.89■□□□□ 0.29
TRIM28-211ENST00000597968 SPTY2D1Q68D10 685 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-211ENST00000597968 CDC42EP5Q6NZY7 148 aa16.89■□□□□ 0.29
TRIM28-211ENST00000597968 ARMC5Q96C12 935 aa16.89■□□□□ 0.29
TRIM28-211ENST00000597968 FAM163AQ96GL9 167 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-211ENST00000597968 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-211ENST00000597968 CENPFP49454 3210 aa16.89■□□□□ 0.29
TRIM28-211ENST00000597968 TLR2O60603 784 aa16.88■□□□□ 0.29
TRIM28-211ENST00000597968 ENTPD3O75355 529 aa16.88■□□□□ 0.29
TRIM28-211ENST00000597968 MAP4K4O95819 1239 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-211ENST00000597968 PRDX5P30044 214 aa16.88■□□□□ 0.29
TRIM28-211ENST00000597968 MVPQ14764 893 aaKnown RBP16.88■□□□□ 0.29
TRIM28-211ENST00000597968 NOL9Q5SY16 702 aaKnown RBP16.88■□□□□ 0.29
TRIM28-211ENST00000597968 CCDC102BQ68D86 513 aa16.88■□□□□ 0.29
TRIM28-211ENST00000597968 CD99L2Q8TCZ2 262 aa16.88■□□□□ 0.29
TRIM28-211ENST00000597968 MEIS3Q99687 375 aa16.88■□□□□ 0.29
TRIM28-211ENST00000597968 IDI2Q9BXS1 227 aa16.88■□□□□ 0.29
TRIM28-211ENST00000597968 IRF6O14896 467 aa16.87■□□□□ 0.29
TRIM28-211ENST00000597968 PRMT2P55345 433 aa16.87■□□□□ 0.29
TRIM28-211ENST00000597968 NBPF11Q86T75 865 aa16.87■□□□□ 0.29
TRIM28-211ENST00000597968 FAM43AQ8N2R8 423 aa16.87■□□□□ 0.29
TRIM28-211ENST00000597968 CNKSR2Q8WXI2 1034 aa16.87■□□□□ 0.29
TRIM28-211ENST00000597968 GAKO14976 1311 aa16.87■□□□□ 0.29
TRIM28-211ENST00000597968 MYH13Q9UKX3 1938 aa16.86■□□□□ 0.29
TRIM28-211ENST00000597968 SRGAP3O43295 1099 aa16.86■□□□□ 0.29
TRIM28-211ENST00000597968 IGSF3O75054 1194 aa16.86■□□□□ 0.29
TRIM28-211ENST00000597968 PHKA1P46020 1223 aa16.86■□□□□ 0.29
TRIM28-211ENST00000597968 KIF22Q14807 665 aa16.86■□□□□ 0.29
TRIM28-211ENST00000597968 DIXDC1Q155Q3 683 aa16.86■□□□□ 0.29
TRIM28-211ENST00000597968 ZKSCAN4Q969J2 545 aaPredicted RBP16.86■□□□□ 0.29
TRIM28-211ENST00000597968 USP40Q9NVE5 1235 aa16.86■□□□□ 0.29
TRIM28-211ENST00000597968 KCNH4Q9UQ05 1017 aa16.86■□□□□ 0.29
TRIM28-211ENST00000597968 NPM3O75607 178 aaKnown RBP16.85■□□□□ 0.29
TRIM28-211ENST00000597968 MAP3K10Q02779 954 aa16.85■□□□□ 0.29
TRIM28-211ENST00000597968 ATF7IPQ6VMQ6 1270 aa16.85■□□□□ 0.29
TRIM28-211ENST00000597968 ANKRD23Q86SG2 305 aa16.85■□□□□ 0.29
TRIM28-211ENST00000597968 FAM198AQ9UFP1 575 aa16.85■□□□□ 0.29
TRIM28-211ENST00000597968 PA2G4Q9UQ80 394 aaKnown RBP16.85■□□□□ 0.29
TRIM28-211ENST00000597968 BRCA2P51587 3418 aa16.84■□□□□ 0.29
TRIM28-211ENST00000597968 A0A1B0GUL7 405 aa16.84■□□□□ 0.29
TRIM28-211ENST00000597968 BTBD19C9JJ37 291 aa16.84■□□□□ 0.29
TRIM28-211ENST00000597968 CXCL11O14625 94 aa16.84■□□□□ 0.29
TRIM28-211ENST00000597968 GNAI2P04899 355 aa16.84■□□□□ 0.29
TRIM28-211ENST00000597968 MIGA2Q7L4E1 593 aa16.84■□□□□ 0.29
TRIM28-211ENST00000597968 DZIP1Q86YF9 867 aaKnown RBP16.84■□□□□ 0.29
TRIM28-211ENST00000597968 TRIM27P14373 513 aa16.83■□□□□ 0.28
TRIM28-211ENST00000597968 MKI67P46013 3256 aaKnown RBP16.83■□□□□ 0.28
TRIM28-211ENST00000597968 TIMM10P62072 90 aa16.83■□□□□ 0.28
TRIM28-211ENST00000597968 NFIAQ12857 509 aa16.83■□□□□ 0.28
TRIM28-211ENST00000597968 RASGRF1Q13972 1273 aa16.83■□□□□ 0.28
TRIM28-211ENST00000597968 XAGE2Q96GT9 111 aa16.83■□□□□ 0.28
TRIM28-211ENST00000597968 RFX7Q2KHR2 1363 aa16.82■□□□□ 0.28
TRIM28-211ENST00000597968 INPP5BP32019 993 aa16.82■□□□□ 0.28
TRIM28-211ENST00000597968 LACTBP83111 547 aaPredicted RBP16.82■□□□□ 0.28
TRIM28-211ENST00000597968 TCP10Q12799 353 aa16.82■□□□□ 0.28
TRIM28-211ENST00000597968 C17orf99Q6UX52 265 aa16.82■□□□□ 0.28
TRIM28-211ENST00000597968 GCC1Q96CN9 775 aa16.82■□□□□ 0.28
TRIM28-211ENST00000597968 ZNF333Q96JL9 665 aa16.82■□□□□ 0.28
TRIM28-211ENST00000597968 TMEM106CQ9BVX2 250 aa16.82■□□□□ 0.28
TRIM28-211ENST00000597968 PDE4DIPQ5VU43 2346 aa16.82■□□□□ 0.28
TRIM28-211ENST00000597968 RBBP6Q7Z6E9 1792 aaKnown RBP16.82■□□□□ 0.28
TRIM28-211ENST00000597968 ATRNL1Q5VV63 1379 aa16.81■□□□□ 0.28
TRIM28-211ENST00000597968 LDHCP07864 332 aa16.81■□□□□ 0.28
TRIM28-211ENST00000597968 HOXD10P28358 340 aa16.81■□□□□ 0.28
TRIM28-211ENST00000597968 ADORA1P30542 326 aa16.81■□□□□ 0.28
TRIM28-211ENST00000597968 GSTO1P78417 241 aa16.81■□□□□ 0.28
TRIM28-211ENST00000597968 SLC9C1Q4G0N8 1177 aa16.81■□□□□ 0.28
TRIM28-211ENST00000597968 ERICH6Q7L0X2 663 aa16.81■□□□□ 0.28
TRIM28-211ENST00000597968 FASTKD5Q7L8L6 764 aaKnown RBP16.81■□□□□ 0.28
TRIM28-211ENST00000597968 MIER1Q8N108 512 aa16.81■□□□□ 0.28
TRIM28-211ENST00000597968 ABCF2Q9UG63 623 aa16.81■□□□□ 0.28
TRIM28-211ENST00000597968 MROH7-TTC4A0A0A0MT08 1334 aa16.8■□□□□ 0.28
TRIM28-211ENST00000597968 GPR75-ASB3A0A0A6YYF3 556 aa16.8■□□□□ 0.28
TRIM28-211ENST00000597968 PHF20L1A8MW92 1017 aa16.8■□□□□ 0.28
TRIM28-211ENST00000597968 TBC1D12O60347 775 aa16.8■□□□□ 0.28
TRIM28-211ENST00000597968 ARID4AP29374 1257 aaPredicted RBP16.8■□□□□ 0.28
TRIM28-211ENST00000597968 RGS3P49796 1198 aa16.8■□□□□ 0.28
TRIM28-211ENST00000597968 TFCP2Q12800 502 aa16.8■□□□□ 0.28
TRIM28-211ENST00000597968 G3BP1Q13283 466 aaKnown RBP eCLIP16.8■□□□□ 0.283e-9■□□□□ 10.4
TRIM28-211ENST00000597968 SCYL3Q8IZE3 742 aa16.8■□□□□ 0.28
TRIM28-211ENST00000597968 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms