RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 DDX46Q7L014 1031 aaKnown RBP16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 ZNF589Q86UQ0 364 aaPredicted RBP16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 EFCAB13Q8IY85 973 aa16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 ZSWIM6Q9HCJ5 1215 aa16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 FAN1Q9Y2M0 1017 aa16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 TAF6LQ9Y6J9 622 aa16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 CTAGE5O15320 804 aa16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 KIF1CO43896 1103 aaKnown RBP16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 N4BP1O75113 896 aaKnown RBP16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 ZRSR1Q15695 479 aaKnown RBP16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 MICALL1Q8N3F8 863 aa16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 TCEANC2Q96MN5 208 aa16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 SEC62Q99442 399 aaKnown RBP16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 LAMB4A4D0S4 1761 aa16.13■□□□□ 0.17
GTF3C1-203ENST00000562609 PATL2C9JE40 543 aaKnown RBP16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 EXOC5O00471 708 aa16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 HLFQ16534 295 aa16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 LRRC31Q6UY01 552 aa16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 RSRC2Q7L4I2 434 aaKnown RBP16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 TADA2BQ86TJ2 420 aa16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 RABGGTAQ92696 567 aa16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 FAM212AQ96EL1 285 aa16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 AKAP2Q9Y2D5 859 aa16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 TDO2P48775 406 aa16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 ATG9AQ7Z3C6 839 aa16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 RBM8AQ9Y5S9 174 aaKnown RBP16.12■□□□□ 0.17
GTF3C1-203ENST00000562609 CCDC151A5D8V7 595 aa16.11■□□□□ 0.17
GTF3C1-203ENST00000562609 PIP4K2BP78356 416 aa16.11■□□□□ 0.17
GTF3C1-203ENST00000562609 TTLL5Q6EMB2 1281 aa16.11■□□□□ 0.17
GTF3C1-203ENST00000562609 CCDC129Q6ZRS4 1044 aa16.11■□□□□ 0.17
GTF3C1-203ENST00000562609 UBR2Q8IWV8 1755 aa16.11■□□□□ 0.17
GTF3C1-203ENST00000562609 ACSBG1Q96GR2 724 aa16.11■□□□□ 0.17
GTF3C1-203ENST00000562609 NAT10Q9H0A0 1025 aaKnown RBP16.11■□□□□ 0.17
GTF3C1-203ENST00000562609 MED4Q9NPJ6 270 aa16.11■□□□□ 0.17
GTF3C1-203ENST00000562609 SATB1Q01826 763 aa16.11■□□□□ 0.17
GTF3C1-203ENST00000562609 CCAR1Q8IX12 1150 aaKnown RBP16.11■□□□□ 0.17
GTF3C1-203ENST00000562609 MNAT1P51948 309 aa16.1■□□□□ 0.17
GTF3C1-203ENST00000562609 TNS2Q63HR2 1409 aa16.1■□□□□ 0.17
GTF3C1-203ENST00000562609 MAP3K9P80192 1104 aa16.1■□□□□ 0.17
GTF3C1-203ENST00000562609 TCIRG1Q13488 830 aa16.1■□□□□ 0.17
GTF3C1-203ENST00000562609 UTP14AQ9BVJ6 771 aaKnown RBP16.1■□□□□ 0.17
GTF3C1-203ENST00000562609 TBC1D2BQ9UPU7 963 aa16.1■□□□□ 0.17
GTF3C1-203ENST00000562609 ZBTB1Q9Y2K1 713 aa16.1■□□□□ 0.17
GTF3C1-203ENST00000562609 SKIDA1Q1XH10 827 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 JAKMIP3Q5VZ66 844 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 GOLGA1Q92805 767 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 TM6SF1Q9BZW5 370 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 ROBO1Q9Y6N7 1651 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 A0A087WUV0 522 aaPredicted RBP16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 KINO60870 393 aaKnown RBP16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 STARD3NLO95772 234 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 TXLNAP40222 546 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 BRD3Q15059 726 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 DDX11Q96FC9 970 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 GOLPH3LQ9H4A5 285 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 PHACTR2O75167 634 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 ATP5JP18859 108 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 GNG11P61952 73 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 NECTIN1Q15223 517 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 KIF6Q6ZMV9 814 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 WDR24Q96S15 920 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 MPHOSPH8Q99549 860 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 ZSWIM4Q9H7M6 989 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 MRFAP1Q9Y605 127 aa16.09■□□□□ 0.17
GTF3C1-203ENST00000562609 CREB3L3Q68CJ9 461 aa16.08■□□□□ 0.16
GTF3C1-203ENST00000562609 CCDC73Q6ZRK6 1079 aa16.08■□□□□ 0.16
GTF3C1-203ENST00000562609 HDXQ7Z353 690 aa16.08■□□□□ 0.16
GTF3C1-203ENST00000562609 GOLIM4O00461 696 aa16.08■□□□□ 0.16
GTF3C1-203ENST00000562609 EIF3JO75822 258 aaKnown RBP16.08■□□□□ 0.16
GTF3C1-203ENST00000562609 STK3Q13188 491 aa16.08■□□□□ 0.16
GTF3C1-203ENST00000562609 CNNM3Q8NE01 707 aa16.08■□□□□ 0.16
GTF3C1-203ENST00000562609 ISCA1Q9BUE6 129 aa16.08■□□□□ 0.16
GTF3C1-203ENST00000562609 CCDC196A0A1B0GTZ2 297 aa16.07■□□□□ 0.16
GTF3C1-203ENST00000562609 VWA3AA6NCI4 1184 aa16.07■□□□□ 0.16
GTF3C1-203ENST00000562609 MAP4K1Q92918 833 aa16.07■□□□□ 0.16
GTF3C1-203ENST00000562609 PPFIA4O75335 1185 aa16.07■□□□□ 0.16
GTF3C1-203ENST00000562609 DHX8Q14562 1220 aaKnown RBP16.07■□□□□ 0.16
GTF3C1-203ENST00000562609 BEND6Q5SZJ8 279 aaPredicted RBP16.07■□□□□ 0.16
GTF3C1-203ENST00000562609 WWC2Q6AWC2 1192 aa16.07■□□□□ 0.16
GTF3C1-203ENST00000562609 KAT2BQ92831 832 aa16.07■□□□□ 0.16
GTF3C1-203ENST00000562609 SUGCTQ9HAC7 445 aa16.07■□□□□ 0.16
GTF3C1-203ENST00000562609 CFAP45Q9UL16 551 aa16.07■□□□□ 0.16
GTF3C1-203ENST00000562609 EYA2O00167 538 aa16.06■□□□□ 0.16
GTF3C1-203ENST00000562609 ZKSCAN1P17029 563 aaPredicted RBP16.06■□□□□ 0.16
GTF3C1-203ENST00000562609 CCDC57Q2TAC2 916 aa16.06■□□□□ 0.16
GTF3C1-203ENST00000562609 CCDC102AQ96A19 550 aa16.06■□□□□ 0.16
GTF3C1-203ENST00000562609 SNRKQ9NRH2 765 aa16.06■□□□□ 0.16
GTF3C1-203ENST00000562609 NUP188Q5SRE5 1749 aa16.06■□□□□ 0.16
GTF3C1-203ENST00000562609 COL15A1P39059 1388 aa16.06■□□□□ 0.16
GTF3C1-203ENST00000562609 ITGB4P16144 1822 aa16.06■□□□□ 0.16
GTF3C1-203ENST00000562609 ZSCAN12O43309 604 aa16.06■□□□□ 0.16
GTF3C1-203ENST00000562609 RESTQ13127 1097 aa16.06■□□□□ 0.16
GTF3C1-203ENST00000562609 PAPPAQ13219 1627 aa16.06■□□□□ 0.16
GTF3C1-203ENST00000562609 SLC27A2O14975 620 aa16.05■□□□□ 0.16
GTF3C1-203ENST00000562609 ERLIN2O94905 339 aa16.05■□□□□ 0.16
GTF3C1-203ENST00000562609 CYP19A1P11511 503 aaPredicted RBP16.05■□□□□ 0.16
GTF3C1-203ENST00000562609 HSP90B2PQ58FF3 399 aa16.05■□□□□ 0.16
GTF3C1-203ENST00000562609 ISM2Q6H9L7 571 aa16.05■□□□□ 0.16
GTF3C1-203ENST00000562609 FTOQ9C0B1 505 aaKnown RBP eCLIP16.05■□□□□ 0.16
GTF3C1-203ENST00000562609 HIP1O00291 1037 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms