RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 BRI3BPQ8WY22 251 aa20.12■□□□□ 0.81
SNX1-213ENST00000561026 FRAT1Q92837 279 aaPredicted RBP20.12■□□□□ 0.81
SNX1-213ENST00000561026 WRNIP1Q96S55 665 aa20.12■□□□□ 0.81
SNX1-213ENST00000561026 SNCAIPQ9Y6H5 919 aa20.12■□□□□ 0.81
SNX1-213ENST00000561026 RPAP1Q9BWH6 1393 aaPredicted RBP20.12■□□□□ 0.81
SNX1-213ENST00000561026 SPDYE5A6NIY4 337 aa20.11■□□□□ 0.81
SNX1-213ENST00000561026 DCAF15Q66K64 600 aa20.11■□□□□ 0.81
SNX1-213ENST00000561026 ZKSCAN4Q969J2 545 aaPredicted RBP20.11■□□□□ 0.81
SNX1-213ENST00000561026 TNNQ9UQP3 1299 aa20.11■□□□□ 0.81
SNX1-213ENST00000561026 AKAP2Q9Y2D5 859 aa20.11■□□□□ 0.81
SNX1-213ENST00000561026 MYH13Q9UKX3 1938 aa20.11■□□□□ 0.81
SNX1-213ENST00000561026 CCL15-CCL14A0A0B4J2E2 113 aa20.1■□□□□ 0.81
SNX1-213ENST00000561026 TFCP2Q12800 502 aa20.1■□□□□ 0.81
SNX1-213ENST00000561026 CCL15Q16663 113 aa20.1■□□□□ 0.81
SNX1-213ENST00000561026 MIGA2Q7L4E1 593 aa20.1■□□□□ 0.81
SNX1-213ENST00000561026 ERO1BQ86YB8 467 aa20.1■□□□□ 0.81
SNX1-213ENST00000561026 ZGPATQ8N5A5 531 aaKnown RBP20.1■□□□□ 0.81
SNX1-213ENST00000561026 ERO1AQ96HE7 468 aa20.1■□□□□ 0.81
SNX1-213ENST00000561026 TRIM17Q9Y577 477 aa20.1■□□□□ 0.81
SNX1-213ENST00000561026 TNRC18O15417 2968 aaPredicted RBP20.1■□□□□ 0.81
SNX1-213ENST00000561026 HTTP42858 3142 aa20.1■□□□□ 0.81
SNX1-213ENST00000561026 A0A1B0GUL7 405 aa20.09■□□□□ 0.81
SNX1-213ENST00000561026 GNAI2P04899 355 aa20.09■□□□□ 0.81
SNX1-213ENST00000561026 TCP10Q12799 353 aa20.09■□□□□ 0.81
SNX1-213ENST00000561026 NFIAQ12857 509 aa20.09■□□□□ 0.81
SNX1-213ENST00000561026 RASGRF1Q13972 1273 aa20.09■□□□□ 0.81
SNX1-213ENST00000561026 OTOP1Q7RTM1 612 aa20.09■□□□□ 0.81
SNX1-213ENST00000561026 CLUAP1Q96AJ1 413 aa20.09■□□□□ 0.81
SNX1-213ENST00000561026 ZNF341Q9BYN7 854 aa20.09■□□□□ 0.81
SNX1-213ENST00000561026 USP40Q9NVE5 1235 aa20.09■□□□□ 0.81
SNX1-213ENST00000561026 PDS5AQ29RF7 1337 aaKnown RBP20.09■□□□□ 0.81
SNX1-213ENST00000561026 SP3Q02447 781 aa20.08■□□□□ 0.81
SNX1-213ENST00000561026 XAGE2Q96GT9 111 aa20.08■□□□□ 0.81
SNX1-213ENST00000561026 FAM198AQ9UFP1 575 aa20.08■□□□□ 0.81
SNX1-213ENST00000561026 CETPP11597 493 aa20.08■□□□□ 0.8
SNX1-213ENST00000561026 MVPQ14764 893 aaKnown RBP20.08■□□□□ 0.8
SNX1-213ENST00000561026 MIER1Q8N108 512 aa20.08■□□□□ 0.8
SNX1-213ENST00000561026 FAM43AQ8N2R8 423 aa20.08■□□□□ 0.8
SNX1-213ENST00000561026 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.08■□□□□ 0.8
SNX1-213ENST00000561026 IRF6O14896 467 aa20.07■□□□□ 0.8
SNX1-213ENST00000561026 INPP5BP32019 993 aa20.07■□□□□ 0.8
SNX1-213ENST00000561026 PPIL2Q13356 520 aa20.07■□□□□ 0.8
SNX1-213ENST00000561026 TAF1CQ15572 869 aaPredicted RBP20.07■□□□□ 0.8
SNX1-213ENST00000561026 CD99L2Q8TCZ2 262 aa20.07■□□□□ 0.8
SNX1-213ENST00000561026 ZFYVE28Q9HCC9 887 aa20.07■□□□□ 0.8
SNX1-213ENST00000561026 ABCF2Q9UG63 623 aa20.07■□□□□ 0.8
SNX1-213ENST00000561026 ZNF112Q9UJU3 913 aa20.07■□□□□ 0.8
SNX1-213ENST00000561026 GAKO14976 1311 aa20.06■□□□□ 0.8
SNX1-213ENST00000561026 PNMA6EA0A0J9YXQ4 647 aa20.06■□□□□ 0.8
SNX1-213ENST00000561026 HNRNPUQ00839 825 aaKnown RBP eCLIP20.06■□□□□ 0.8
SNX1-213ENST00000561026 PPATQ06203 517 aa20.06■□□□□ 0.8
SNX1-213ENST00000561026 SNAPC2Q13487 334 aa20.06■□□□□ 0.8
SNX1-213ENST00000561026 ZKSCAN2Q63HK3 967 aa20.06■□□□□ 0.8
SNX1-213ENST00000561026 DZIP1Q86YF9 867 aaKnown RBP20.06■□□□□ 0.8
SNX1-213ENST00000561026 FAM163AQ96GL9 167 aaPredicted RBP20.06■□□□□ 0.8
SNX1-213ENST00000561026 NEUROD6Q96NK8 337 aa20.06■□□□□ 0.8
SNX1-213ENST00000561026 CENPFP49454 3210 aa20.06■□□□□ 0.8
SNX1-213ENST00000561026 SPTY2D1Q68D10 685 aaPredicted RBP20.05■□□□□ 0.8
SNX1-213ENST00000561026 ZFPM1Q8IX07 1006 aa20.05■□□□□ 0.8
SNX1-213ENST00000561026 SLF2Q8IX21 1173 aa20.05■□□□□ 0.8
SNX1-213ENST00000561026 TMEM57Q8N5G2 664 aa20.05■□□□□ 0.8
SNX1-213ENST00000561026 IDI2Q9BXS1 227 aa20.05■□□□□ 0.8
SNX1-213ENST00000561026 EFCC1Q9HA90 598 aa20.05■□□□□ 0.8
SNX1-213ENST00000561026 ZCCHC17Q9NP64 241 aaKnown RBP20.05■□□□□ 0.8
SNX1-213ENST00000561026 PTPN22Q9Y2R2 807 aa20.05■□□□□ 0.8
SNX1-213ENST00000561026 PDE4DIPQ5VU43 2346 aa20.04■□□□□ 0.8
SNX1-213ENST00000561026 BTBD19C9JJ37 291 aa20.04■□□□□ 0.8
SNX1-213ENST00000561026 CAP1Q01518 475 aa20.04■□□□□ 0.8
SNX1-213ENST00000561026 G3BP1Q13283 466 aaKnown RBP eCLIP20.04■□□□□ 0.8
SNX1-213ENST00000561026 ENTPD3O75355 529 aa20.03■□□□□ 0.8
SNX1-213ENST00000561026 WDHD1O75717 1129 aaPredicted RBP20.03■□□□□ 0.8
SNX1-213ENST00000561026 RGS3P49796 1198 aa20.03■□□□□ 0.8
SNX1-213ENST00000561026 NOL9Q5SY16 702 aaKnown RBP20.02■□□□□ 0.8
SNX1-213ENST00000561026 GORABQ5T7V8 394 aa20.02■□□□□ 0.8
SNX1-213ENST00000561026 DIEXFQ68CQ4 756 aaKnown RBP20.02■□□□□ 0.8
SNX1-213ENST00000561026 ERICH6Q7L0X2 663 aa20.02■□□□□ 0.8
SNX1-213ENST00000561026 SPATA5Q8NB90 893 aa20.02■□□□□ 0.8
SNX1-213ENST00000561026 HMG20BQ9P0W2 317 aa20.02■□□□□ 0.8
SNX1-213ENST00000561026 TLR2O60603 784 aa20.01■□□□□ 0.79
SNX1-213ENST00000561026 MECOMQ03112 1051 aa20.01■□□□□ 0.79
SNX1-213ENST00000561026 ARHGEF6Q15052 776 aa20.01■□□□□ 0.79
SNX1-213ENST00000561026 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.01■□□□□ 0.79
SNX1-213ENST00000561026 KCNH4Q9UQ05 1017 aa20.01■□□□□ 0.79
SNX1-213ENST00000561026 MYH2Q9UKX2 1941 aa20■□□□□ 0.79
SNX1-213ENST00000561026 GPR75-ASB3A0A0A6YYF3 556 aa20■□□□□ 0.79
SNX1-213ENST00000561026 ARID4AP29374 1257 aaPredicted RBP20■□□□□ 0.79
SNX1-213ENST00000561026 BTDP43251 543 aa20■□□□□ 0.79
SNX1-213ENST00000561026 POLA2Q14181 598 aa20■□□□□ 0.79
SNX1-213ENST00000561026 SH3BP5LQ7L8J4 393 aa20■□□□□ 0.79
SNX1-213ENST00000561026 ZNF384Q8TF68 577 aa20■□□□□ 0.79
SNX1-213ENST00000561026 RFX7Q2KHR2 1363 aa20■□□□□ 0.79
SNX1-213ENST00000561026 ATRNL1Q5VV63 1379 aa20■□□□□ 0.79
SNX1-213ENST00000561026 MROH7-TTC4A0A0A0MT08 1334 aa20■□□□□ 0.79
SNX1-213ENST00000561026 PHF20L1A8MW92 1017 aa19.99■□□□□ 0.79
SNX1-213ENST00000561026 ATP8B2P98198 1209 aa19.99■□□□□ 0.79
SNX1-213ENST00000561026 MAP3K10Q02779 954 aa19.99■□□□□ 0.79
SNX1-213ENST00000561026 PI16Q6UXB8 463 aa19.99■□□□□ 0.79
SNX1-213ENST00000561026 TBC1D9Q6ZT07 1266 aa19.99■□□□□ 0.79
SNX1-213ENST00000561026 ZSCAN29Q8IWY8 852 aaPredicted RBP19.99■□□□□ 0.79
SNX1-213ENST00000561026 DDX4Q9NQI0 724 aaKnown RBP19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms