RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 CRHR2Q13324 411 aa8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 ZNF787Q6DD87 383 aa8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 USP17L1Q7RTZ2 530 aa8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 DZIP1LQ8IYY4 767 aaKnown RBP8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 ARHGAP45Q92619 1136 aa8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 ZNF333Q96JL9 665 aa8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 CCDC85AQ96PX6 553 aaPredicted RBP8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 API5Q9BZZ5 524 aaKnown RBP8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 RBM27Q9P2N5 1060 aaKnown RBP8.9□□□□□ -0.98
DEPDC4-208ENST00000549341 IRS4O14654 1257 aaPredicted RBP8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 RPS8P62241 208 aaKnown RBP8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 CAMK2BQ13554 666 aa8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 B4GALNT3Q6L9W6 998 aa8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 PPP1R18Q6NYC8 613 aa8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 ATF7IPQ6VMQ6 1270 aa8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 OGFOD1Q8N543 542 aa8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 SSH1Q8WYL5 1049 aa8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 CLMNQ96JQ2 1002 aa8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 GMLQ99445 158 aa8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 STK31Q9BXU1 1019 aa8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 SEC31BQ9NQW1 1179 aa8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 PTCH2Q9Y6C5 1203 aa8.89□□□□□ -0.99
DEPDC4-208ENST00000549341 WNT10BO00744 389 aa8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 CAP1Q01518 475 aa8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 SF3B3Q15393 1217 aaKnown RBP8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 CCDC30Q5VVM6 783 aa8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 APOBEC3FQ8IUX4 373 aaKnown RBP8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 DPF3Q92784 378 aa8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 SLC10A4Q96EP9 437 aa8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 WNK4Q96J92 1243 aa8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 PODXL2Q9NZ53 605 aa8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 DDX19BQ9UMR2 479 aa8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 KDM3BQ7LBC6 1761 aa8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 DDX60Q8IY21 1712 aaKnown RBP8.88□□□□□ -0.99
DEPDC4-208ENST00000549341 XDHP47989 1333 aa8.87□□□□□ -0.99
DEPDC4-208ENST00000549341 LAMB2P55268 1798 aa8.87□□□□□ -0.99
DEPDC4-208ENST00000549341 ELL2O00472 640 aaPredicted RBP8.87□□□□□ -0.99
DEPDC4-208ENST00000549341 HOXB7P09629 217 aa8.87□□□□□ -0.99
DEPDC4-208ENST00000549341 ZBTB48P10074 688 aaPredicted RBP8.87□□□□□ -0.99
DEPDC4-208ENST00000549341 SP3Q02447 781 aa8.87□□□□□ -0.99
DEPDC4-208ENST00000549341 SH3TC2Q8TF17 1288 aa8.87□□□□□ -0.99
DEPDC4-208ENST00000549341 MTRQ99707 1265 aa8.87□□□□□ -0.99
DEPDC4-208ENST00000549341 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.87□□□□□ -0.99
DEPDC4-208ENST00000549341 CHPF2Q9P2E5 772 aa8.87□□□□□ -0.99
DEPDC4-208ENST00000549341 NOB1Q9ULX3 412 aaKnown RBP8.87□□□□□ -0.99
DEPDC4-208ENST00000549341 PTPRCP08575 1304 aa8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 DPYSL4O14531 572 aa8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 MVPQ14764 893 aaKnown RBP8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 KRT24Q2M2I5 525 aa8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 DACT2Q5SW24 774 aa8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 LDLRAD1Q5T700 205 aa8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 OTUD7BQ6GQQ9 843 aa8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 CENPQQ7L2Z9 268 aaPredicted RBP8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 NBPF11Q86T75 865 aa8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 KIAA0825Q8IV33 1275 aa8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 C8orf58Q8NAV2 365 aa8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 SCN9AQ15858 1988 aa8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 SSC5DA1L4H1 1573 aa8.86□□□□□ -0.99
DEPDC4-208ENST00000549341 WTIPA6NIX2 430 aaPredicted RBP8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 GGCXP38435 758 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 INHBEP58166 350 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 CCDC152Q4G0S7 254 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 C20orf194Q5TEA3 1177 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 PODNQ7Z5L7 613 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 ITPRIPQ8IWB1 547 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 TSPYL6Q8N831 410 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 PLBD2Q8NHP8 589 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 PANK1Q8TE04 598 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 DDX12PQ92771 950 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 CLUAP1Q96AJ1 413 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 ISCA1Q9BUE6 129 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 DEFB129Q9H1M3 183 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 COG6Q9Y2V7 657 aa8.85□□□□□ -0.99
DEPDC4-208ENST00000549341 MYO3BQ8WXR4 1341 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 ANKRD36CQ5JPF3 1778 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 CLRN2A0PK11 232 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 MAP3K7O43318 606 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 PPP1R12BO60237 982 aaPredicted RBP8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 TRIM27P14373 513 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 TAF1P21675 1872 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 ATP2B4P23634 1241 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 GJA5P36382 358 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 TAF1CQ15572 869 aaPredicted RBP8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 HDGFL1Q5TGJ6 251 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 ANKRD18AQ8IVF6 992 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 JARID2Q92833 1246 aaPredicted RBP8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 ELP3Q9H9T3 547 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 VEZTQ9HBM0 779 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 MED23Q9ULK4 1368 aa8.84□□□□□ -0.99
DEPDC4-208ENST00000549341 UNC80Q8N2C7 3258 aa8.83□□□□□ -1
DEPDC4-208ENST00000549341 SOX1O00570 391 aaPredicted RBP8.83□□□□□ -1
DEPDC4-208ENST00000549341 IREB2P48200 963 aaKnown RBP8.83□□□□□ -1
DEPDC4-208ENST00000549341 ARHGEF6Q15052 776 aa8.83□□□□□ -1
DEPDC4-208ENST00000549341 SHISA4Q96DD7 197 aa8.83□□□□□ -1
DEPDC4-208ENST00000549341 PTPN18Q99952 460 aa8.83□□□□□ -1
DEPDC4-208ENST00000549341 ARHGAP39Q9C0H5 1083 aa8.83□□□□□ -1
DEPDC4-208ENST00000549341 RWDD1Q9H446 243 aaPredicted RBP8.83□□□□□ -1
DEPDC4-208ENST00000549341 COL1A1P02452 1464 aaPredicted RBP8.83□□□□□ -1
DEPDC4-208ENST00000549341 F8W031 263 aaPredicted RBP8.82□□□□□ -1
DEPDC4-208ENST00000549341 KLRK1P26718 216 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms