RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 ZKSCAN4Q969J2 545 aaPredicted RBP17.59■□□□□ 0.41
SNHG1-213ENST00000540725 MEIS3Q99687 375 aa17.59■□□□□ 0.41
SNHG1-213ENST00000540725 EFCC1Q9HA90 598 aa17.59■□□□□ 0.41
SNHG1-213ENST00000540725 GNL3LQ9NVN8 582 aaKnown RBP17.59■□□□□ 0.41
SNHG1-213ENST00000540725 CCER2I3L3R5 266 aa17.58■□□□□ 0.4
SNHG1-213ENST00000540725 RARSP54136 660 aaKnown RBP17.58■□□□□ 0.4
SNHG1-213ENST00000540725 FAM43AQ8N2R8 423 aa17.58■□□□□ 0.4
SNHG1-213ENST00000540725 ZFYVE28Q9HCC9 887 aa17.58■□□□□ 0.4
SNHG1-213ENST00000540725 PTPN22Q9Y2R2 807 aa17.58■□□□□ 0.4
SNHG1-213ENST00000540725 DOCK2Q92608 1830 aa17.58■□□□□ 0.4
SNHG1-213ENST00000540725 LDHBP07195 334 aaKnown RBP17.57■□□□□ 0.4
SNHG1-213ENST00000540725 PHKA1P46020 1223 aa17.57■□□□□ 0.4
SNHG1-213ENST00000540725 CAP1Q01518 475 aa17.57■□□□□ 0.4
SNHG1-213ENST00000540725 CDC42EP5Q6NZY7 148 aa17.57■□□□□ 0.4
SNHG1-213ENST00000540725 FAM151AQ8WW52 585 aa17.57■□□□□ 0.4
SNHG1-213ENST00000540725 ZNF341Q9BYN7 854 aa17.57■□□□□ 0.4
SNHG1-213ENST00000540725 COPRSQ9NQ92 184 aa17.57■□□□□ 0.4
SNHG1-213ENST00000540725 DENND2AQ9ULE3 1009 aa17.57■□□□□ 0.4
SNHG1-213ENST00000540725 SALL1Q9NSC2 1324 aa17.57■□□□□ 0.4
SNHG1-213ENST00000540725 ZSWIM8A7E2V4 1837 aa17.57■□□□□ 0.4
SNHG1-213ENST00000540725 SEMA3EO15041 775 aa17.56■□□□□ 0.4
SNHG1-213ENST00000540725 CETPP11597 493 aa17.56■□□□□ 0.4
SNHG1-213ENST00000540725 PPIL2Q13356 520 aa17.56■□□□□ 0.4
SNHG1-213ENST00000540725 MIGA2Q7L4E1 593 aa17.56■□□□□ 0.4
SNHG1-213ENST00000540725 IRF6O14896 467 aa17.55■□□□□ 0.4
SNHG1-213ENST00000540725 ADORA1P30542 326 aa17.55■□□□□ 0.4
SNHG1-213ENST00000540725 INPP5BP32019 993 aa17.55■□□□□ 0.4
SNHG1-213ENST00000540725 TCP10Q12799 353 aa17.55■□□□□ 0.4
SNHG1-213ENST00000540725 NFIAQ12857 509 aa17.55■□□□□ 0.4
SNHG1-213ENST00000540725 SNAPC2Q13487 334 aa17.55■□□□□ 0.4
SNHG1-213ENST00000540725 PRPF38BQ5VTL8 546 aaKnown RBP17.55■□□□□ 0.4
SNHG1-213ENST00000540725 INTS3Q68E01 1043 aaKnown RBP17.55■□□□□ 0.4
SNHG1-213ENST00000540725 ARHGAP45Q92619 1136 aa17.55■□□□□ 0.4
SNHG1-213ENST00000540725 WDHD1O75717 1129 aaPredicted RBP17.54■□□□□ 0.4
SNHG1-213ENST00000540725 GNAI3P08754 354 aa17.54■□□□□ 0.4
SNHG1-213ENST00000540725 CCDC102BQ68D86 513 aa17.54■□□□□ 0.4
SNHG1-213ENST00000540725 ZCCHC17Q9NP64 241 aaKnown RBP17.54■□□□□ 0.4
SNHG1-213ENST00000540725 MKI67P46013 3256 aaKnown RBP17.54■□□□□ 0.4
SNHG1-213ENST00000540725 BTBD19C9JJ37 291 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 ZBTB22O15209 634 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 PPATQ06203 517 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 ARHGEF6Q15052 776 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 ARMC5Q96C12 935 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 USP40Q9NVE5 1235 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 FAM198AQ9UFP1 575 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 POTEFA5A3E0 1075 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 SRGAP3O43295 1099 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 TIMM10P62072 90 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 RASGRF1Q13972 1273 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 ZGPATQ8N5A5 531 aaKnown RBP17.53■□□□□ 0.4
SNHG1-213ENST00000540725 ZNF112Q9UJU3 913 aa17.53■□□□□ 0.4
SNHG1-213ENST00000540725 BRCA2P51587 3418 aa17.52■□□□□ 0.4
SNHG1-213ENST00000540725 CEP290O15078 2479 aa17.52■□□□□ 0.39
SNHG1-213ENST00000540725 TLR2O60603 784 aa17.52■□□□□ 0.39
SNHG1-213ENST00000540725 MTX1Q13505 466 aa17.52■□□□□ 0.39
SNHG1-213ENST00000540725 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.52■□□□□ 0.39
SNHG1-213ENST00000540725 PDS5AQ29RF7 1337 aaKnown RBP17.52■□□□□ 0.39
SNHG1-213ENST00000540725 A0A1B0GUL7 405 aa17.51■□□□□ 0.39
SNHG1-213ENST00000540725 TFCP2Q12800 502 aa17.51■□□□□ 0.39
SNHG1-213ENST00000540725 DZIP1Q86YF9 867 aaKnown RBP17.51■□□□□ 0.39
SNHG1-213ENST00000540725 ZFPM1Q8IX07 1006 aa17.51■□□□□ 0.39
SNHG1-213ENST00000540725 ABCF2Q9UG63 623 aa17.51■□□□□ 0.39
SNHG1-213ENST00000540725 AKAP2Q9Y2D5 859 aa17.51■□□□□ 0.39
SNHG1-213ENST00000540725 GAKO14976 1311 aa17.51■□□□□ 0.39
SNHG1-213ENST00000540725 PTPRFP10586 1907 aa17.5■□□□□ 0.39
SNHG1-213ENST00000540725 IPO8O15397 1037 aaKnown RBP17.5■□□□□ 0.39
SNHG1-213ENST00000540725 RGS3P49796 1198 aa17.5■□□□□ 0.39
SNHG1-213ENST00000540725 RFX7Q2KHR2 1363 aa17.5■□□□□ 0.39
SNHG1-213ENST00000540725 NOL9Q5SY16 702 aaKnown RBP17.5■□□□□ 0.39
SNHG1-213ENST00000540725 XAGE2Q96GT9 111 aa17.5■□□□□ 0.39
SNHG1-213ENST00000540725 IDI2Q9BXS1 227 aa17.5■□□□□ 0.39
SNHG1-213ENST00000540725 KCNH4Q9UQ05 1017 aa17.5■□□□□ 0.39
SNHG1-213ENST00000540725 PTCH2Q9Y6C5 1203 aa17.5■□□□□ 0.39
SNHG1-213ENST00000540725 DOCK1Q14185 1865 aa17.49■□□□□ 0.39
SNHG1-213ENST00000540725 ATRNL1Q5VV63 1379 aa17.49■□□□□ 0.39
SNHG1-213ENST00000540725 ENTPD3O75355 529 aa17.49■□□□□ 0.39
SNHG1-213ENST00000540725 TRIM27P14373 513 aa17.49■□□□□ 0.39
SNHG1-213ENST00000540725 LACTBP83111 547 aaPredicted RBP17.49■□□□□ 0.39
SNHG1-213ENST00000540725 MVPQ14764 893 aaKnown RBP17.49■□□□□ 0.39
SNHG1-213ENST00000540725 KIF22Q14807 665 aa17.49■□□□□ 0.39
SNHG1-213ENST00000540725 SPTY2D1Q68D10 685 aaPredicted RBP17.49■□□□□ 0.39
SNHG1-213ENST00000540725 SLF2Q8IX21 1173 aa17.49■□□□□ 0.39
SNHG1-213ENST00000540725 ZNF333Q96JL9 665 aa17.49■□□□□ 0.39
SNHG1-213ENST00000540725 ARHGAP39Q9C0H5 1083 aa17.49■□□□□ 0.39
SNHG1-213ENST00000540725 TNNQ9UQP3 1299 aa17.49■□□□□ 0.39
SNHG1-213ENST00000540725 SLC9C1Q4G0N8 1177 aa17.48■□□□□ 0.39
SNHG1-213ENST00000540725 ATF7IPQ6VMQ6 1270 aa17.48■□□□□ 0.39
SNHG1-213ENST00000540725 ANKRD23Q86SG2 305 aa17.48■□□□□ 0.39
SNHG1-213ENST00000540725 FRAT1Q92837 279 aaPredicted RBP17.48■□□□□ 0.39
SNHG1-213ENST00000540725 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.48■□□□□ 0.39
SNHG1-213ENST00000540725 PHIPQ8WWQ0 1821 aa17.48■□□□□ 0.39
SNHG1-213ENST00000540725 MGAMO43451 1857 aa17.47■□□□□ 0.39
SNHG1-213ENST00000540725 PDHXO00330 501 aa17.47■□□□□ 0.39
SNHG1-213ENST00000540725 BCAR3O75815 825 aa17.47■□□□□ 0.39
SNHG1-213ENST00000540725 GNAI2P04899 355 aa17.47■□□□□ 0.39
SNHG1-213ENST00000540725 FAM163AQ96GL9 167 aaPredicted RBP17.47■□□□□ 0.39
SNHG1-213ENST00000540725 NEUROD6Q96NK8 337 aa17.47■□□□□ 0.39
SNHG1-213ENST00000540725 TMEM106CQ9BVX2 250 aa17.47■□□□□ 0.39
SNHG1-213ENST00000540725 MROH7-TTC4A0A0A0MT08 1334 aa17.46■□□□□ 0.39
SNHG1-213ENST00000540725 PHF20L1A8MW92 1017 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms