RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZFYVE28Q9HCC9 887 aa14.15□□□□□ -0.14
VPS28-214ENST00000531032 ZCCHC17Q9NP64 241 aaKnown RBP14.15□□□□□ -0.14
VPS28-214ENST00000531032 CEP126Q9P2H0 1117 aa14.15□□□□□ -0.14
VPS28-214ENST00000531032 HDAC5Q9UQL6 1122 aa14.15□□□□□ -0.14
VPS28-214ENST00000531032 LRRFIP2Q9Y608 721 aaKnown RBP14.15□□□□□ -0.14
VPS28-214ENST00000531032 SEMA3EO15041 775 aa14.14□□□□□ -0.15
VPS28-214ENST00000531032 CETPP11597 493 aa14.14□□□□□ -0.15
VPS28-214ENST00000531032 IL15P40933 162 aaPredicted RBP14.14□□□□□ -0.15
VPS28-214ENST00000531032 DIXDC1Q155Q3 683 aa14.14□□□□□ -0.15
VPS28-214ENST00000531032 FAM151AQ8WW52 585 aa14.14□□□□□ -0.15
VPS28-214ENST00000531032 ARMC5Q96C12 935 aa14.14□□□□□ -0.15
VPS28-214ENST00000531032 GNL3LQ9NVN8 582 aaKnown RBP14.14□□□□□ -0.15
VPS28-214ENST00000531032 BRCA2P51587 3418 aa14.13□□□□□ -0.15
VPS28-214ENST00000531032 IRF6O14896 467 aa14.13□□□□□ -0.15
VPS28-214ENST00000531032 LDHBP07195 334 aaKnown RBP14.13□□□□□ -0.15
VPS28-214ENST00000531032 PHKA1P46020 1223 aa14.13□□□□□ -0.15
VPS28-214ENST00000531032 RARSP54136 660 aaKnown RBP14.13□□□□□ -0.15
VPS28-214ENST00000531032 PPIL2Q13356 520 aa14.13□□□□□ -0.15
VPS28-214ENST00000531032 SNAPC2Q13487 334 aa14.13□□□□□ -0.15
VPS28-214ENST00000531032 CDC42EP5Q6NZY7 148 aa14.13□□□□□ -0.15
VPS28-214ENST00000531032 MEIS3Q99687 375 aa14.13□□□□□ -0.15
VPS28-214ENST00000531032 ZNF341Q9BYN7 854 aa14.13□□□□□ -0.15
VPS28-214ENST00000531032 COPRSQ9NQ92 184 aa14.13□□□□□ -0.15
VPS28-214ENST00000531032 DENND2AQ9ULE3 1009 aa14.13□□□□□ -0.15
VPS28-214ENST00000531032 PA2G4Q9UQ80 394 aaKnown RBP14.13□□□□□ -0.15
VPS28-214ENST00000531032 MKI67P46013 3256 aaKnown RBP14.12□□□□□ -0.15
VPS28-214ENST00000531032 POTEFA5A3E0 1075 aa14.12□□□□□ -0.15
VPS28-214ENST00000531032 BTBD19C9JJ37 291 aa14.12□□□□□ -0.15
VPS28-214ENST00000531032 CCER2I3L3R5 266 aa14.12□□□□□ -0.15
VPS28-214ENST00000531032 TLR2O60603 784 aa14.12□□□□□ -0.15
VPS28-214ENST00000531032 INPP5BP32019 993 aa14.12□□□□□ -0.15
VPS28-214ENST00000531032 PPATQ06203 517 aa14.12□□□□□ -0.15
VPS28-214ENST00000531032 NFIAQ12857 509 aa14.12□□□□□ -0.15
VPS28-214ENST00000531032 MIGA2Q7L4E1 593 aa14.12□□□□□ -0.15
VPS28-214ENST00000531032 ARHGAP45Q92619 1136 aa14.12□□□□□ -0.15
VPS28-214ENST00000531032 ZNF112Q9UJU3 913 aa14.12□□□□□ -0.15
VPS28-214ENST00000531032 WDHD1O75717 1129 aaPredicted RBP14.11□□□□□ -0.15
VPS28-214ENST00000531032 TCP10Q12799 353 aa14.11□□□□□ -0.15
VPS28-214ENST00000531032 ARHGEF6Q15052 776 aa14.11□□□□□ -0.15
VPS28-214ENST00000531032 CCDC102BQ68D86 513 aa14.11□□□□□ -0.15
VPS28-214ENST00000531032 FAM198AQ9UFP1 575 aa14.11□□□□□ -0.15
VPS28-214ENST00000531032 MYH2Q9UKX2 1941 aa14.11□□□□□ -0.15
VPS28-214ENST00000531032 PDS5AQ29RF7 1337 aaKnown RBP14.11□□□□□ -0.15
VPS28-214ENST00000531032 RFX7Q2KHR2 1363 aa14.1□□□□□ -0.15
VPS28-214ENST00000531032 AK9Q5TCS8 1911 aa14.1□□□□□ -0.15
VPS28-214ENST00000531032 ADORA1P30542 326 aa14.1□□□□□ -0.15
VPS28-214ENST00000531032 MTX1Q13505 466 aa14.1□□□□□ -0.15
VPS28-214ENST00000531032 NOL9Q5SY16 702 aaKnown RBP14.1□□□□□ -0.15
VPS28-214ENST00000531032 ZGPATQ8N5A5 531 aaKnown RBP14.1□□□□□ -0.15
VPS28-214ENST00000531032 USP40Q9NVE5 1235 aa14.1□□□□□ -0.15
VPS28-214ENST00000531032 KCNH4Q9UQ05 1017 aa14.1□□□□□ -0.15
VPS28-214ENST00000531032 ZSWIM8A7E2V4 1837 aa14.1□□□□□ -0.15
VPS28-214ENST00000531032 DOCK2Q92608 1830 aa14.1□□□□□ -0.15
VPS28-214ENST00000531032 GAKO14976 1311 aa14.1□□□□□ -0.15
VPS28-214ENST00000531032 KIAA0100Q14667 2235 aaKnown RBP14.1□□□□□ -0.15
VPS28-214ENST00000531032 ATRNL1Q5VV63 1379 aa14.09□□□□□ -0.15
VPS28-214ENST00000531032 GNAI3P08754 354 aa14.09□□□□□ -0.15
VPS28-214ENST00000531032 LACTBP83111 547 aaPredicted RBP14.09□□□□□ -0.15
VPS28-214ENST00000531032 RASGRF1Q13972 1273 aa14.09□□□□□ -0.15
VPS28-214ENST00000531032 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.09□□□□□ -0.15
VPS28-214ENST00000531032 ZNF333Q96JL9 665 aa14.09□□□□□ -0.15
VPS28-214ENST00000531032 IDI2Q9BXS1 227 aa14.09□□□□□ -0.15
VPS28-214ENST00000531032 PTCH2Q9Y6C5 1203 aa14.09□□□□□ -0.15
VPS28-214ENST00000531032 SRGAP3O43295 1099 aa14.08□□□□□ -0.16
VPS28-214ENST00000531032 TIMM10P62072 90 aa14.08□□□□□ -0.16
VPS28-214ENST00000531032 ANKRD23Q86SG2 305 aa14.08□□□□□ -0.16
VPS28-214ENST00000531032 ZFPM1Q8IX07 1006 aa14.08□□□□□ -0.16
VPS28-214ENST00000531032 ARHGAP39Q9C0H5 1083 aa14.08□□□□□ -0.16
VPS28-214ENST00000531032 AKAP2Q9Y2D5 859 aa14.08□□□□□ -0.16
VPS28-214ENST00000531032 A0A1B0GUL7 405 aa14.07□□□□□ -0.16
VPS28-214ENST00000531032 ENTPD3O75355 529 aa14.07□□□□□ -0.16
VPS28-214ENST00000531032 GNRH1P01148 92 aa14.07□□□□□ -0.16
VPS28-214ENST00000531032 RGS3P49796 1198 aa14.07□□□□□ -0.16
VPS28-214ENST00000531032 MOGSQ13724 837 aa14.07□□□□□ -0.16
VPS28-214ENST00000531032 KIF22Q14807 665 aa14.07□□□□□ -0.16
VPS28-214ENST00000531032 SLC9C1Q4G0N8 1177 aa14.07□□□□□ -0.16
VPS28-214ENST00000531032 C17orf99Q6UX52 265 aa14.07□□□□□ -0.16
VPS28-214ENST00000531032 NBPF11Q86T75 865 aa14.07□□□□□ -0.16
VPS28-214ENST00000531032 DZIP1Q86YF9 867 aaKnown RBP14.07□□□□□ -0.16
VPS28-214ENST00000531032 FAM163AQ96GL9 167 aaPredicted RBP14.07□□□□□ -0.16
VPS28-214ENST00000531032 XAGE2Q96GT9 111 aa14.07□□□□□ -0.16
VPS28-214ENST00000531032 ADGRA2Q96PE1 1338 aa14.07□□□□□ -0.16
VPS28-214ENST00000531032 PHF20L1A8MW92 1017 aa14.06□□□□□ -0.16
VPS28-214ENST00000531032 PDHXO00330 501 aa14.06□□□□□ -0.16
VPS28-214ENST00000531032 TRIM27P14373 513 aa14.06□□□□□ -0.16
VPS28-214ENST00000531032 EN2P19622 333 aaPredicted RBP14.06□□□□□ -0.16
VPS28-214ENST00000531032 MAP3K10Q02779 954 aa14.06□□□□□ -0.16
VPS28-214ENST00000531032 TFCP2Q12800 502 aa14.06□□□□□ -0.16
VPS28-214ENST00000531032 MVPQ14764 893 aaKnown RBP14.06□□□□□ -0.16
VPS28-214ENST00000531032 SLF2Q8IX21 1173 aa14.06□□□□□ -0.16
VPS28-214ENST00000531032 ABCF2Q9UG63 623 aa14.06□□□□□ -0.16
VPS28-214ENST00000531032 CXCL11O14625 94 aa14.05□□□□□ -0.16
VPS28-214ENST00000531032 IPO8O15397 1037 aaKnown RBP14.05□□□□□ -0.16
VPS28-214ENST00000531032 PRMT2P55345 433 aa14.05□□□□□ -0.16
VPS28-214ENST00000531032 SPTY2D1Q68D10 685 aaPredicted RBP14.05□□□□□ -0.16
VPS28-214ENST00000531032 ATF7IPQ6VMQ6 1270 aa14.05□□□□□ -0.16
VPS28-214ENST00000531032 SH3BP5LQ7L8J4 393 aa14.05□□□□□ -0.16
VPS28-214ENST00000531032 TMEM106CQ9BVX2 250 aa14.05□□□□□ -0.16
VPS28-214ENST00000531032 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.05□□□□□ -0.16
VPS28-214ENST00000531032 MROH7-TTC4A0A0A0MT08 1334 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms