RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 NLRP2Q9NX02 1062 aa9.87□□□□□ -0.83
NUP54-209ENST00000510569 COL17A1Q9UMD9 1497 aaPredicted RBP9.86□□□□□ -0.83
NUP54-209ENST00000510569 NFICP08651 508 aa9.86□□□□□ -0.83
NUP54-209ENST00000510569 FCGRTP55899 365 aa9.86□□□□□ -0.83
NUP54-209ENST00000510569 DTHD1Q6ZMT9 781 aa9.86□□□□□ -0.83
NUP54-209ENST00000510569 BCO2Q9BYV7 579 aa9.86□□□□□ -0.83
NUP54-209ENST00000510569 PNMA6FA0A0J9YX94 578 aa9.85□□□□□ -0.83
NUP54-209ENST00000510569 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.85□□□□□ -0.83
NUP54-209ENST00000510569 WNT11O96014 354 aa9.85□□□□□ -0.83
NUP54-209ENST00000510569 MAPK1P28482 360 aa9.85□□□□□ -0.83
NUP54-209ENST00000510569 SEZ6L2Q6UXD5 910 aa9.85□□□□□ -0.83
NUP54-209ENST00000510569 CCDC86Q9H6F5 360 aaKnown RBP9.85□□□□□ -0.83
NUP54-209ENST00000510569 KRT82Q9NSB4 513 aa9.85□□□□□ -0.83
NUP54-209ENST00000510569 PPP1R9AQ9ULJ8 1098 aa9.85□□□□□ -0.83
NUP54-209ENST00000510569 TMPRSS2O15393 492 aa9.84□□□□□ -0.83
NUP54-209ENST00000510569 ASPAP45381 313 aa9.84□□□□□ -0.83
NUP54-209ENST00000510569 TMEM39AQ9NV64 488 aa9.84□□□□□ -0.83
NUP54-209ENST00000510569 PCDHGC5Q9Y5F6 944 aa9.84□□□□□ -0.83
NUP54-209ENST00000510569 FAM170BA6NMN3 283 aa9.83□□□□□ -0.84
NUP54-209ENST00000510569 PRNPP04156 253 aa9.83□□□□□ -0.84
NUP54-209ENST00000510569 GSTP1P09211 210 aaKnown RBP9.83□□□□□ -0.84
NUP54-209ENST00000510569 ZNF157P51786 506 aaPredicted RBP9.83□□□□□ -0.84
NUP54-209ENST00000510569 PPP2R3AQ06190 1150 aa9.83□□□□□ -0.84
NUP54-209ENST00000510569 KIF4BQ2VIQ3 1234 aa9.83□□□□□ -0.84
NUP54-209ENST00000510569 PDZD3Q86UT5 571 aa9.83□□□□□ -0.84
NUP54-209ENST00000510569 WDR89Q96FK6 387 aaPredicted RBP9.83□□□□□ -0.84
NUP54-209ENST00000510569 PPP4R2Q9NY27 417 aa9.83□□□□□ -0.84
NUP54-209ENST00000510569 CRIM1Q9NZV1 1036 aa9.83□□□□□ -0.84
NUP54-209ENST00000510569 ZNF862O60290 1169 aa9.82□□□□□ -0.84
NUP54-209ENST00000510569 IRAK1P51617 712 aa9.82□□□□□ -0.84
NUP54-209ENST00000510569 PLCB3Q01970 1234 aa9.82□□□□□ -0.84
NUP54-209ENST00000510569 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.82□□□□□ -0.84
NUP54-209ENST00000510569 C1GALT1Q9NS00 363 aa9.82□□□□□ -0.84
NUP54-209ENST00000510569 GPN3Q9UHW5 284 aaPredicted RBP9.82□□□□□ -0.84
NUP54-209ENST00000510569 KRTAP9-6A0A140TA67 174 aa9.81□□□□□ -0.84
NUP54-209ENST00000510569 LIG1P18858 919 aa9.81□□□□□ -0.84
NUP54-209ENST00000510569 HNRNPUQ00839 825 aaKnown RBP eCLIP9.81□□□□□ -0.84
NUP54-209ENST00000510569 CYP27A1Q02318 531 aa9.81□□□□□ -0.84
NUP54-209ENST00000510569 FMR1Q06787 632 aaKnown RBP eCLIP9.81□□□□□ -0.84
NUP54-209ENST00000510569 KCNA1Q09470 495 aa9.81□□□□□ -0.84
NUP54-209ENST00000510569 C3orf58Q8NDZ4 430 aa9.81□□□□□ -0.84
NUP54-209ENST00000510569 FBF1Q8TES7 1133 aa9.81□□□□□ -0.84
NUP54-209ENST00000510569 CYP26A1O43174 497 aa9.8□□□□□ -0.84
NUP54-209ENST00000510569 DYNC1LI2O43237 492 aaPredicted RBP9.8□□□□□ -0.84
NUP54-209ENST00000510569 NXPE4Q6UWF7 544 aa9.8□□□□□ -0.84
NUP54-209ENST00000510569 ATXN3LQ9H3M9 355 aa9.8□□□□□ -0.84
NUP54-209ENST00000510569 DAGLAQ9Y4D2 1042 aa9.8□□□□□ -0.84
NUP54-209ENST00000510569 SLFN14P0C7P3 912 aa9.79□□□□□ -0.84
NUP54-209ENST00000510569 ID3Q02535 119 aa9.79□□□□□ -0.84
NUP54-209ENST00000510569 NFXL1Q6ZNB6 911 aa9.79□□□□□ -0.84
NUP54-209ENST00000510569 ZNF765Q7L2R6 523 aa9.79□□□□□ -0.84
NUP54-209ENST00000510569 FANCD2OSQ96PS1 177 aa9.79□□□□□ -0.84
NUP54-209ENST00000510569 ZC3H12CQ9C0D7 883 aaKnown RBP9.79□□□□□ -0.84
NUP54-209ENST00000510569 CCDC39Q9UFE4 941 aa9.79□□□□□ -0.84
NUP54-209ENST00000510569 IVNS1ABPQ9Y6Y0 642 aa9.79□□□□□ -0.84
NUP54-209ENST00000510569 DUSP27Q5VZP5 1158 aa9.78□□□□□ -0.84
NUP54-209ENST00000510569 VSIG10LQ86VR7 867 aa9.78□□□□□ -0.84
NUP54-209ENST00000510569 SULF2Q8IWU5 870 aa9.78□□□□□ -0.84
NUP54-209ENST00000510569 ASB16Q96NS5 453 aa9.78□□□□□ -0.84
NUP54-209ENST00000510569 BSDC1Q9NW68 430 aaPredicted RBP9.78□□□□□ -0.84
NUP54-209ENST00000510569 ZSCAN29Q8IWY8 852 aaPredicted RBP9.77□□□□□ -0.85
NUP54-209ENST00000510569 STK35Q8TDR2 534 aa9.77□□□□□ -0.85
NUP54-209ENST00000510569 KRTAP4-12Q9BQ66 201 aa9.77□□□□□ -0.85
NUP54-209ENST00000510569 SRCIN1Q9C0H9 1055 aa9.77□□□□□ -0.85
NUP54-209ENST00000510569 DISC1Q9NRI5 854 aa9.77□□□□□ -0.85
NUP54-209ENST00000510569 ANGEL1Q9UNK9 670 aaKnown RBP9.77□□□□□ -0.85
NUP54-209ENST00000510569 NME2P22392 152 aa9.76□□□□□ -0.85
NUP54-209ENST00000510569 OGFOD3Q6PK18 319 aa9.76□□□□□ -0.85
NUP54-209ENST00000510569 ADGRE2Q9UHX3 823 aa9.76□□□□□ -0.85
NUP54-209ENST00000510569 AKAP2Q9Y2D5 859 aa9.76□□□□□ -0.85
NUP54-209ENST00000510569 ARNTP27540 789 aa9.75□□□□□ -0.85
NUP54-209ENST00000510569 GSTT1P30711 240 aa9.75□□□□□ -0.85
NUP54-209ENST00000510569 ZNF252P-AS1Q0IIN9 211 aa9.75□□□□□ -0.85
NUP54-209ENST00000510569 ANKRD24Q8TF21 1146 aa9.75□□□□□ -0.85
NUP54-209ENST00000510569 PIDD1Q9HB75 910 aa9.75□□□□□ -0.85
NUP54-209ENST00000510569 CACNA2D2Q9NY47 1150 aa9.75□□□□□ -0.85
NUP54-209ENST00000510569 PPM1HQ9ULR3 514 aa9.75□□□□□ -0.85
NUP54-209ENST00000510569 TAL1P17542 331 aaPredicted RBP9.74□□□□□ -0.85
NUP54-209ENST00000510569 MAPK8P45983 427 aa9.74□□□□□ -0.85
NUP54-209ENST00000510569 ABI1Q8IZP0 508 aa9.74□□□□□ -0.85
NUP54-209ENST00000510569 KCNB2Q92953 911 aa9.74□□□□□ -0.85
NUP54-209ENST00000510569 FBXL18Q96ME1 805 aa9.74□□□□□ -0.85
NUP54-209ENST00000510569 NECAB3Q96P71 396 aaPredicted RBP9.74□□□□□ -0.85
NUP54-209ENST00000510569 EMILIN2Q9BXX0 1053 aa9.74□□□□□ -0.85
NUP54-209ENST00000510569 ZC3H7BQ9UGR2 993 aaKnown RBP9.74□□□□□ -0.85
NUP54-209ENST00000510569 GIPC1O14908 333 aa9.73□□□□□ -0.85
NUP54-209ENST00000510569 ALG1LQ6GMV1 187 aa9.73□□□□□ -0.85
NUP54-209ENST00000510569 SMYD4Q8IYR2 804 aaPredicted RBP9.73□□□□□ -0.85
NUP54-209ENST00000510569 OSBPL7Q9BZF2 842 aa9.73□□□□□ -0.85
NUP54-209ENST00000510569 PAX4O43316 350 aa9.72□□□□□ -0.85
NUP54-209ENST00000510569 TTLL4Q14679 1199 aa9.72□□□□□ -0.85
NUP54-209ENST00000510569 ZC3H12AQ5D1E8 599 aaKnown RBP9.72□□□□□ -0.85
NUP54-209ENST00000510569 FMNL2Q96PY5 1086 aa9.72□□□□□ -0.85
NUP54-209ENST00000510569 SETDB2Q96T68 719 aa9.72□□□□□ -0.85
NUP54-209ENST00000510569 TRAIPQ9BWF2 469 aa9.72□□□□□ -0.85
NUP54-209ENST00000510569 CEP44Q9C0F1 390 aa9.72□□□□□ -0.85
NUP54-209ENST00000510569 LGR6Q9HBX8 967 aa9.72□□□□□ -0.85
NUP54-209ENST00000510569 LRRC4CQ9HCJ2 640 aa9.72□□□□□ -0.85
NUP54-209ENST00000510569 ENC1O14682 589 aa9.71□□□□□ -0.86
NUP54-209ENST00000510569 NEFMP07197 916 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms