RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 ATP11AP98196 1134 aa9.72□□□□□ -0.85
VIM-207ENST00000495528 PLD4Q96BZ4 506 aa9.72□□□□□ -0.85
VIM-207ENST00000495528 LPIN3Q9BQK8 851 aa9.72□□□□□ -0.85
VIM-207ENST00000495528 RBSNQ9H1K0 784 aa9.72□□□□□ -0.85
VIM-207ENST00000495528 LATS2Q9NRM7 1088 aa9.72□□□□□ -0.85
VIM-207ENST00000495528 JCADQ9P266 1359 aa9.72□□□□□ -0.85
VIM-207ENST00000495528 ADGRL2O95490 1459 aa9.72□□□□□ -0.85
VIM-207ENST00000495528 RGS9O75916 674 aaPredicted RBP9.71□□□□□ -0.86
VIM-207ENST00000495528 KIF4AO95239 1232 aa9.71□□□□□ -0.86
VIM-207ENST00000495528 RASSF4Q9H2L5 321 aa9.71□□□□□ -0.86
VIM-207ENST00000495528 ADAMTS8Q9UP79 889 aa9.71□□□□□ -0.86
VIM-207ENST00000495528 NWD1Q149M9 1564 aa9.71□□□□□ -0.86
VIM-207ENST00000495528 P4HBP07237 508 aaKnown RBP9.7□□□□□ -0.86
VIM-207ENST00000495528 SNRPNP63162 240 aaKnown RBP9.7□□□□□ -0.86
VIM-207ENST00000495528 CEP120Q8N960 986 aa9.7□□□□□ -0.86
VIM-207ENST00000495528 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.7□□□□□ -0.86
VIM-207ENST00000495528 SETDB2Q96T68 719 aa9.7□□□□□ -0.86
VIM-207ENST00000495528 RPRD2Q5VT52 1461 aaKnown RBP9.7□□□□□ -0.86
VIM-207ENST00000495528 EDN3P14138 238 aa9.69□□□□□ -0.86
VIM-207ENST00000495528 FMR1Q06787 632 aaKnown RBP eCLIP9.69□□□□□ -0.86
VIM-207ENST00000495528 CEP135Q66GS9 1140 aa9.69□□□□□ -0.86
VIM-207ENST00000495528 KANK3Q6NY19 840 aa9.69□□□□□ -0.86
VIM-207ENST00000495528 C20orf204Q6ZNR8 217 aa9.69□□□□□ -0.86
VIM-207ENST00000495528 ADAMTS13Q76LX8 1427 aa9.69□□□□□ -0.86
VIM-207ENST00000495528 CCDC74AQ96AQ1 378 aa9.69□□□□□ -0.86
VIM-207ENST00000495528 DNAJC25Q9H1X3 360 aa9.69□□□□□ -0.86
VIM-207ENST00000495528 C19orf44Q9H6X5 657 aa9.69□□□□□ -0.86
VIM-207ENST00000495528 NPHS2Q9NP85 383 aa9.69□□□□□ -0.86
VIM-207ENST00000495528 STK17AQ9UEE5 414 aa9.69□□□□□ -0.86
VIM-207ENST00000495528 WWC3Q9ULE0 1092 aa9.69□□□□□ -0.86
VIM-207ENST00000495528 NCOA3Q9Y6Q9 1424 aa9.68□□□□□ -0.86
VIM-207ENST00000495528 LILRB5O75023 590 aa9.68□□□□□ -0.86
VIM-207ENST00000495528 ATF3P18847 181 aa9.68□□□□□ -0.86
VIM-207ENST00000495528 IRS1P35568 1242 aa9.68□□□□□ -0.86
VIM-207ENST00000495528 ENOX2Q16206 610 aaKnown RBP9.68□□□□□ -0.86
VIM-207ENST00000495528 GDF6Q6KF10 455 aaPredicted RBP9.68□□□□□ -0.86
VIM-207ENST00000495528 NPAS4Q8IUM7 802 aa9.68□□□□□ -0.86
VIM-207ENST00000495528 GALNT12Q8IXK2 581 aa9.68□□□□□ -0.86
VIM-207ENST00000495528 HHIPQ96QV1 700 aa9.68□□□□□ -0.86
VIM-207ENST00000495528 OSMRQ99650 979 aa9.68□□□□□ -0.86
VIM-207ENST00000495528 PODXL2Q9NZ53 605 aa9.68□□□□□ -0.86
VIM-207ENST00000495528 FRRS1LQ9P0K9 344 aa9.68□□□□□ -0.86
VIM-207ENST00000495528 SPATA31A6Q5VVP1 1343 aa9.67□□□□□ -0.86
VIM-207ENST00000495528 CNTNAP5Q8WYK1 1306 aa9.67□□□□□ -0.86
VIM-207ENST00000495528 HOXB4P17483 251 aaPredicted RBP9.67□□□□□ -0.86
VIM-207ENST00000495528 DGKGP49619 791 aa9.67□□□□□ -0.86
VIM-207ENST00000495528 MEX3CQ5U5Q3 659 aaKnown RBP9.67□□□□□ -0.86
VIM-207ENST00000495528 PEAR1Q5VY43 1037 aaPredicted RBP9.67□□□□□ -0.86
VIM-207ENST00000495528 EPS8L3Q8TE67 593 aaKnown RBP9.67□□□□□ -0.86
VIM-207ENST00000495528 ZKSCAN3Q9BRR0 538 aa9.67□□□□□ -0.86
VIM-207ENST00000495528 PBX4Q9BYU1 374 aa9.67□□□□□ -0.86
VIM-207ENST00000495528 TRIM33Q9UPN9 1127 aa9.67□□□□□ -0.86
VIM-207ENST00000495528 TMEM131LA2VDJ0 1609 aa9.67□□□□□ -0.86
VIM-207ENST00000495528 PHLPP1O60346 1717 aa9.66□□□□□ -0.86
VIM-207ENST00000495528 SMNDC1O75940 238 aaKnown RBP eCLIP9.66□□□□□ -0.86
VIM-207ENST00000495528 AFF1P51825 1210 aaKnown RBP9.66□□□□□ -0.86
VIM-207ENST00000495528 EAPPQ56P03 285 aaPredicted RBP9.66□□□□□ -0.86
VIM-207ENST00000495528 ZNF772Q68DY9 489 aaPredicted RBP9.66□□□□□ -0.86
VIM-207ENST00000495528 PI16Q6UXB8 463 aa9.66□□□□□ -0.86
VIM-207ENST00000495528 LACRTQ9GZZ8 138 aa9.66□□□□□ -0.86
VIM-207ENST00000495528 DZANK1Q9NVP4 752 aa9.66□□□□□ -0.86
VIM-207ENST00000495528 LRP6O75581 1613 aa9.66□□□□□ -0.86
VIM-207ENST00000495528 CHD2O14647 1828 aaKnown RBP9.66□□□□□ -0.86
VIM-207ENST00000495528 PIK3R4Q99570 1358 aa9.65□□□□□ -0.86
VIM-207ENST00000495528 FAM181BA6NEQ2 426 aa9.65□□□□□ -0.86
VIM-207ENST00000495528 GADD45BO75293 160 aaPredicted RBP9.65□□□□□ -0.86
VIM-207ENST00000495528 LDHBP07195 334 aaKnown RBP9.65□□□□□ -0.86
VIM-207ENST00000495528 BRINP3Q76B58 766 aa9.65□□□□□ -0.86
VIM-207ENST00000495528 PTPRUQ92729 1446 aa9.65□□□□□ -0.87
VIM-207ENST00000495528 COL16A1Q07092 1604 aaPredicted RBP9.64□□□□□ -0.87
VIM-207ENST00000495528 A0A1W2PP55 124 aa9.64□□□□□ -0.87
VIM-207ENST00000495528 ATP2B2Q01814 1243 aa9.64□□□□□ -0.87
VIM-207ENST00000495528 PODNQ7Z5L7 613 aa9.64□□□□□ -0.87
VIM-207ENST00000495528 POP1Q99575 1024 aaKnown RBP9.64□□□□□ -0.87
VIM-207ENST00000495528 EHD4Q9H223 541 aa9.64□□□□□ -0.87
VIM-207ENST00000495528 NUP155O75694 1391 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 MYO5BQ9ULV0 1848 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 NFKBIEO00221 500 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 PDE2AO00408 941 aaPredicted RBP9.63□□□□□ -0.87
VIM-207ENST00000495528 RXRBP28702 533 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 ITGAEP38570 1179 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 GRIK5Q16478 980 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.63□□□□□ -0.87
VIM-207ENST00000495528 ADAMTSL4Q6UY14 1074 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 LINC00114Q6XXX2 140 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 NLRP2Q9NX02 1062 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 MKL2Q9ULH7 1088 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 GCC2Q8IWJ2 1684 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 ROCK1Q13464 1354 aa9.63□□□□□ -0.87
VIM-207ENST00000495528 METTL12A8MUP2 240 aa9.62□□□□□ -0.87
VIM-207ENST00000495528 ERCC3P19447 782 aa9.62□□□□□ -0.87
VIM-207ENST00000495528 CDC25BP30305 580 aa9.62□□□□□ -0.87
VIM-207ENST00000495528 TAGLNQ01995 201 aaKnown RBP9.62□□□□□ -0.87
VIM-207ENST00000495528 IL22RA1Q8N6P7 574 aa9.62□□□□□ -0.87
VIM-207ENST00000495528 BEND7Q8N7W2 519 aaPredicted RBP9.62□□□□□ -0.87
VIM-207ENST00000495528 ASAP3Q8TDY4 903 aa9.62□□□□□ -0.87
VIM-207ENST00000495528 LIN7BQ9HAP6 207 aa9.62□□□□□ -0.87
VIM-207ENST00000495528 SETD1AO15047 1707 aaKnown RBP9.62□□□□□ -0.87
VIM-207ENST00000495528 NID1P14543 1247 aa9.61□□□□□ -0.87
VIM-207ENST00000495528 COL9A3Q14050 684 aaPredicted RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms