RNA–Protein interactions for RNA: ENST00000439962.1

EDEM3-203, Transcript of ER degradation enhancing alpha-mannosidase like protein 3, humanhuman

TSL 1 (best)

Gene EDEM3, Length 2,872 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EDEM3-203ENST00000439962 LPIN2Q92539 896 aa5.7□□□□□ -1.5
EDEM3-203ENST00000439962 INTS4Q96HW7 963 aaKnown RBP5.7□□□□□ -1.5
EDEM3-203ENST00000439962 SLKQ9H2G2 1235 aaPredicted RBP5.7□□□□□ -1.5
EDEM3-203ENST00000439962 HDAC9Q9UKV0 1011 aa5.7□□□□□ -1.5
EDEM3-203ENST00000439962 TTC41PQ6P2S7 1318 aa5.7□□□□□ -1.5
EDEM3-203ENST00000439962 MED23Q9ULK4 1368 aa5.7□□□□□ -1.5
EDEM3-203ENST00000439962 GOLGA6L3A6NEY3 463 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 TRAK2O60296 914 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 CYP2E1P05181 493 aaPredicted RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 SDSP20132 328 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 ZNF157P51786 506 aaPredicted RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 DEFB115Q30KQ5 88 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 GRIPAP1Q4V328 841 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 USP50Q70EL3 339 aaPredicted RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 VGLL2Q8N8G2 317 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 DEFB129Q9H1M3 183 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 BOLA2Q9H3K6 86 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 ANGEL1Q9UNK9 670 aaKnown RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 UTYO14607 1347 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 MYO1BO43795 1136 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 MYCP01106 439 aaPredicted RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 NBPF12Q5TAG4 269 aaPredicted RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 CCDC84Q86UT8 332 aaPredicted RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 ERC1Q8IUD2 1116 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 EAF2Q96CJ1 260 aaPredicted RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 CEP290O15078 2479 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 RFX7Q2KHR2 1363 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 LDHBP07195 334 aaKnown RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 MX1P20591 662 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 CRKP46108 304 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 CACNB1Q02641 598 aaPredicted RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 NFIAQ12857 509 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 RASA3Q14644 834 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 SAMD1Q6SPF0 538 aaPredicted RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 CDCA5Q96FF9 252 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 CLMNQ96JQ2 1002 aa5.69□□□□□ -1.5
EDEM3-203ENST00000439962 GNL3LQ9NVN8 582 aaKnown RBP5.69□□□□□ -1.5
EDEM3-203ENST00000439962 ZC3H4Q9UPT8 1303 aaKnown RBP5.68□□□□□ -1.5
EDEM3-203ENST00000439962 LTBP1Q14766 1721 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 IFIT2P09913 472 aaKnown RBP5.68□□□□□ -1.5
EDEM3-203ENST00000439962 MCAMP43121 646 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 ZAP70P43403 619 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 FSTL1Q12841 308 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 KLHL40Q2TBA0 621 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 TNNI3KQ59H18 835 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 AGBL3Q8NEM8 1001 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 TDRD7Q8NHU6 1098 aaKnown RBP5.68□□□□□ -1.5
EDEM3-203ENST00000439962 OTUD7AQ8TE49 926 aaPredicted RBP5.68□□□□□ -1.5
EDEM3-203ENST00000439962 CNKSR2Q8WXI2 1034 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 DPF2Q92785 391 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 KIF1BPQ96EK5 621 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 COPRSQ9NQ92 184 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 AATFQ9NY61 560 aaKnown RBP eCLIP5.68□□□□□ -1.5
EDEM3-203ENST00000439962 DBNLQ9UJU6 430 aaKnown RBP5.68□□□□□ -1.5
EDEM3-203ENST00000439962 FPGT-TNNI3KV9GXZ4 949 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 GOLIM4O00461 696 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 CUL4AQ13619 759 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 CCDC158Q5M9N0 1113 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 FBXO33Q7Z6M2 555 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 ZFPM1Q8IX07 1006 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 C2orf69Q8N8R5 385 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 TNPO1Q92973 898 aaKnown RBP5.68□□□□□ -1.5
EDEM3-203ENST00000439962 TEKT1Q969V4 418 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 CAPNS2Q96L46 248 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 ESYT1Q9BSJ8 1104 aa5.68□□□□□ -1.5
EDEM3-203ENST00000439962 GBA2Q9HCG7 927 aaPredicted RBP5.68□□□□□ -1.5
EDEM3-203ENST00000439962 SAP30BPQ9UHR5 308 aaKnown RBP5.68□□□□□ -1.5
EDEM3-203ENST00000439962 KIAA0100Q14667 2235 aaKnown RBP5.67□□□□□ -1.5
EDEM3-203ENST00000439962 HIP1O00291 1037 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 TRPA1O75762 1119 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 HSP90AA1P07900 732 aaKnown RBP5.67□□□□□ -1.5
EDEM3-203ENST00000439962 HSPA1AP0DMV8 641 aaKnown RBP5.67□□□□□ -1.5
EDEM3-203ENST00000439962 HSPA1BP0DMV9 641 aaKnown RBP5.67□□□□□ -1.5
EDEM3-203ENST00000439962 IL1R1P14778 569 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 SAPCD2Q86UD0 394 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 DNAJC5GQ8N7S2 189 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 RHPN1Q8TCX5 695 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 ZKSCAN4Q969J2 545 aaPredicted RBP5.67□□□□□ -1.5
EDEM3-203ENST00000439962 KLRG1Q96E93 195 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 GMLQ99445 158 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 BEGAINQ9BUH8 593 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 USP40Q9NVE5 1235 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 HMG20BQ9P0W2 317 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 VCANP13611 3396 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 CDH23Q9H251 3354 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 SPDYE2BA6NHP3 402 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 RAD21O60216 631 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 SPDYE6P0CI01 402 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 FGFR2P21802 821 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 RPS12P25398 132 aaKnown RBP5.67□□□□□ -1.5
EDEM3-203ENST00000439962 COL13A1Q5TAT6 717 aaPredicted RBP5.67□□□□□ -1.5
EDEM3-203ENST00000439962 CLASRPQ8N2M8 674 aaKnown RBP5.67□□□□□ -1.5
EDEM3-203ENST00000439962 SPATA5Q8NB90 893 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 AKAP2Q9Y2D5 859 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 RAD50Q92878 1312 aa5.67□□□□□ -1.5
EDEM3-203ENST00000439962 ZNF445P59923 1031 aa5.66□□□□□ -1.5
EDEM3-203ENST00000439962 DYNLL1P63167 89 aaKnown RBP5.66□□□□□ -1.5
EDEM3-203ENST00000439962 MECOMQ03112 1051 aa5.66□□□□□ -1.5
EDEM3-203ENST00000439962 GPATCH3Q96I76 525 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms