RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 HOOK2Q96ED9 719 aa13.76□□□□□ -0.21
RFFL-204ENST00000414419 ZBTB40Q9NUA8 1239 aa13.76□□□□□ -0.21
RFFL-204ENST00000414419 HMG20BQ9P0W2 317 aa13.76□□□□□ -0.21
RFFL-204ENST00000414419 EXOC6BQ9Y2D4 811 aa13.76□□□□□ -0.21
RFFL-204ENST00000414419 CASP8AP2Q9UKL3 1982 aa13.75□□□□□ -0.21
RFFL-204ENST00000414419 MKRN3Q13064 507 aaKnown RBP13.75□□□□□ -0.21
RFFL-204ENST00000414419 ANKRD13AQ8IZ07 590 aa13.75□□□□□ -0.21
RFFL-204ENST00000414419 CSRNP1Q96S65 589 aa13.75□□□□□ -0.21
RFFL-204ENST00000414419 DBNDD2Q9BQY9 259 aa13.75□□□□□ -0.21
RFFL-204ENST00000414419 USP40Q9NVE5 1235 aa13.75□□□□□ -0.21
RFFL-204ENST00000414419 RAI14Q9P0K7 980 aa13.75□□□□□ -0.21
RFFL-204ENST00000414419 TSKSQ9UJT2 592 aa13.75□□□□□ -0.21
RFFL-204ENST00000414419 USP2O75604 605 aaPredicted RBP13.74□□□□□ -0.21
RFFL-204ENST00000414419 LDHCP07864 332 aa13.74□□□□□ -0.21
RFFL-204ENST00000414419 GSTO1P78417 241 aa13.74□□□□□ -0.21
RFFL-204ENST00000414419 C20orf194Q5TEA3 1177 aa13.74□□□□□ -0.21
RFFL-204ENST00000414419 CDC42EP5Q6NZY7 148 aa13.74□□□□□ -0.21
RFFL-204ENST00000414419 TEPSINQ96N21 525 aa13.74□□□□□ -0.21
RFFL-204ENST00000414419 CCDC8Q9H0W5 538 aaPredicted RBP13.74□□□□□ -0.21
RFFL-204ENST00000414419 LRP2BPQ9P2M1 347 aa13.74□□□□□ -0.21
RFFL-204ENST00000414419 SSC5DA1L4H1 1573 aa13.74□□□□□ -0.21
RFFL-204ENST00000414419 APBB1O00213 710 aa13.73□□□□□ -0.21
RFFL-204ENST00000414419 TRPA1O75762 1119 aa13.73□□□□□ -0.21
RFFL-204ENST00000414419 MCAMP43121 646 aa13.73□□□□□ -0.21
RFFL-204ENST00000414419 SREBF2Q12772 1141 aa13.73□□□□□ -0.21
RFFL-204ENST00000414419 TCP10Q12799 353 aa13.73□□□□□ -0.21
RFFL-204ENST00000414419 PI16Q6UXB8 463 aa13.73□□□□□ -0.21
RFFL-204ENST00000414419 TBC1D9Q6ZT07 1266 aa13.73□□□□□ -0.21
RFFL-204ENST00000414419 AACSQ86V21 672 aa13.73□□□□□ -0.21
RFFL-204ENST00000414419 FAM151AQ8WW52 585 aa13.73□□□□□ -0.21
RFFL-204ENST00000414419 SNRKQ9NRH2 765 aa13.73□□□□□ -0.21
RFFL-204ENST00000414419 SAGE1Q9NXZ1 904 aa13.73□□□□□ -0.21
RFFL-204ENST00000414419 GAKO14976 1311 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 BTDP43251 543 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 MECOMQ03112 1051 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 IFFO2Q5TF58 517 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 SPRYD7Q5W111 196 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 DCAF15Q66K64 600 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 CDAN1Q8IWY9 1227 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 CLASRPQ8N2M8 674 aaKnown RBP13.72□□□□□ -0.21
RFFL-204ENST00000414419 RHPN1Q8TCX5 695 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 EAF2Q96CJ1 260 aaPredicted RBP13.72□□□□□ -0.21
RFFL-204ENST00000414419 KIF1BPQ96EK5 621 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 FAM163AQ96GL9 167 aaPredicted RBP13.72□□□□□ -0.21
RFFL-204ENST00000414419 CLMNQ96JQ2 1002 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 NOL10Q9BSC4 688 aaKnown RBP13.72□□□□□ -0.21
RFFL-204ENST00000414419 BCL11AQ9H165 835 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 RNF186Q9NXI6 227 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 DBNLQ9UJU6 430 aaKnown RBP13.72□□□□□ -0.21
RFFL-204ENST00000414419 CSADQ9Y600 493 aa13.72□□□□□ -0.21
RFFL-204ENST00000414419 MYO5AQ9Y4I1 1855 aaKnown RBP13.72□□□□□ -0.21
RFFL-204ENST00000414419 MROH7-TTC4A0A0A0MT08 1334 aa13.71□□□□□ -0.21
RFFL-204ENST00000414419 OTOFQ9HC10 1997 aa13.71□□□□□ -0.21
RFFL-204ENST00000414419 RAB11FIP3O75154 756 aa13.71□□□□□ -0.21
RFFL-204ENST00000414419 ZBTB48P10074 688 aaPredicted RBP13.71□□□□□ -0.21
RFFL-204ENST00000414419 MAP3K9P80192 1104 aa13.71□□□□□ -0.21
RFFL-204ENST00000414419 WNK4Q96J92 1243 aa13.71□□□□□ -0.21
RFFL-204ENST00000414419 ZNF512BQ96KM6 892 aaPredicted RBP13.71□□□□□ -0.21
RFFL-204ENST00000414419 IL1RAPL2Q9NP60 686 aa13.71□□□□□ -0.21
RFFL-204ENST00000414419 RPAP1Q9BWH6 1393 aaPredicted RBP13.71□□□□□ -0.22
RFFL-204ENST00000414419 MANSC4A6NHS7 340 aaPredicted RBP13.7□□□□□ -0.22
RFFL-204ENST00000414419 IFIT2P09913 472 aaKnown RBP13.7□□□□□ -0.22
RFFL-204ENST00000414419 TM4SF4P48230 202 aa13.7□□□□□ -0.22
RFFL-204ENST00000414419 INHBEP58166 350 aa13.7□□□□□ -0.22
RFFL-204ENST00000414419 NFIAQ12857 509 aa13.7□□□□□ -0.22
RFFL-204ENST00000414419 ZSCAN29Q8IWY8 852 aaPredicted RBP13.7□□□□□ -0.22
RFFL-204ENST00000414419 SIRT2Q8IXJ6 389 aa13.7□□□□□ -0.22
RFFL-204ENST00000414419 NSUN4Q96CB9 384 aaKnown RBP13.7□□□□□ -0.22
RFFL-204ENST00000414419 ZNF341Q9BYN7 854 aa13.7□□□□□ -0.22
RFFL-204ENST00000414419 ELP3Q9H9T3 547 aa13.7□□□□□ -0.22
RFFL-204ENST00000414419 TLR7Q9NYK1 1049 aaKnown RBP13.7□□□□□ -0.22
RFFL-204ENST00000414419 GPR75-ASB3A0A0A6YYF3 556 aa13.69□□□□□ -0.22
RFFL-204ENST00000414419 ENTPD3O75355 529 aa13.69□□□□□ -0.22
RFFL-204ENST00000414419 RGS3P49796 1198 aa13.69□□□□□ -0.22
RFFL-204ENST00000414419 NAA16Q6N069 864 aaPredicted RBP13.69□□□□□ -0.22
RFFL-204ENST00000414419 MIGA2Q7L4E1 593 aa13.69□□□□□ -0.22
RFFL-204ENST00000414419 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.69□□□□□ -0.22
RFFL-204ENST00000414419 WRNIP1Q96S55 665 aa13.69□□□□□ -0.22
RFFL-204ENST00000414419 IDI2Q9BXS1 227 aa13.69□□□□□ -0.22
RFFL-204ENST00000414419 FAM198AQ9UFP1 575 aa13.69□□□□□ -0.22
RFFL-204ENST00000414419 IGSF3O75054 1194 aa13.68□□□□□ -0.22
RFFL-204ENST00000414419 BAG3O95817 575 aa13.68□□□□□ -0.22
RFFL-204ENST00000414419 MAP4K4O95819 1239 aaPredicted RBP13.68□□□□□ -0.22
RFFL-204ENST00000414419 ALDH1A1P00352 501 aa13.68□□□□□ -0.22
RFFL-204ENST00000414419 CYP2E1P05181 493 aaPredicted RBP13.68□□□□□ -0.22
RFFL-204ENST00000414419 ZAP70P43403 619 aa13.68□□□□□ -0.22
RFFL-204ENST00000414419 PICALMQ13492 652 aa13.68□□□□□ -0.22
RFFL-204ENST00000414419 VGLL4Q14135 290 aa13.68□□□□□ -0.22
RFFL-204ENST00000414419 OTUD7BQ6GQQ9 843 aa13.68□□□□□ -0.22
RFFL-204ENST00000414419 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.68□□□□□ -0.22
RFFL-204ENST00000414419 OPTNQ96CV9 577 aa13.68□□□□□ -0.22
RFFL-204ENST00000414419 DOCK2Q92608 1830 aa13.68□□□□□ -0.22
RFFL-204ENST00000414419 MAST2Q6P0Q8 1798 aa13.68□□□□□ -0.22
RFFL-204ENST00000414419 PLCG2P16885 1265 aa13.67□□□□□ -0.22
RFFL-204ENST00000414419 RRP1P56182 461 aaKnown RBP13.67□□□□□ -0.22
RFFL-204ENST00000414419 LAMB1P07942 1786 aa13.66□□□□□ -0.22
RFFL-204ENST00000414419 WDHD1O75717 1129 aaPredicted RBP13.66□□□□□ -0.22
RFFL-204ENST00000414419 IDH1O75874 414 aaKnown RBP13.66□□□□□ -0.22
RFFL-204ENST00000414419 IFNL1Q8IU54 200 aa13.66□□□□□ -0.22
RFFL-204ENST00000414419 ZFPM1Q8IX07 1006 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms