RNA–Protein interactions for RNA: ENST00000394872.6

COL4A6-203, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 5 BASIC

Gene COL4A6, Length 6,750 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-203ENST00000394872 AATFQ9NY61 560 aaKnown RBP eCLIP11.69□□□□□ -0.54
COL4A6-203ENST00000394872 CALCOCO1Q9P1Z2 691 aa11.69□□□□□ -0.54
COL4A6-203ENST00000394872 TNNI3KQ59H18 835 aa11.69□□□□□ -0.54
COL4A6-203ENST00000394872 CCDC87Q9NVE4 849 aa11.69□□□□□ -0.54
COL4A6-203ENST00000394872 TXNDC16Q9P2K2 825 aa11.69□□□□□ -0.54
COL4A6-203ENST00000394872 FPGT-TNNI3KV9GXZ4 949 aa11.69□□□□□ -0.54
COL4A6-203ENST00000394872 WDR66Q8TBY9 1149 aa11.69□□□□□ -0.54
COL4A6-203ENST00000394872 FBF1Q8TES7 1133 aa11.69□□□□□ -0.54
COL4A6-203ENST00000394872 CAPZA3Q96KX2 299 aa11.69□□□□□ -0.54
COL4A6-203ENST00000394872 CHMLP26374 656 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 PRIM1P49642 420 aaKnown RBP11.68□□□□□ -0.54
COL4A6-203ENST00000394872 HOOK2Q96ED9 719 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 ZNF594Q96JF6 807 aaPredicted RBP11.68□□□□□ -0.54
COL4A6-203ENST00000394872 IFT74Q96LB3 600 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 TAF5LO75529 589 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 TYRO3Q06418 890 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 STRN3Q13033 797 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 CCDC24Q8N4L8 307 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 CCDC114Q96M63 670 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 DDX23Q9BUQ8 820 aaKnown RBP11.68□□□□□ -0.54
COL4A6-203ENST00000394872 PROCA1Q8NCQ7 364 aaPredicted RBP11.68□□□□□ -0.54
COL4A6-203ENST00000394872 CTNND2Q9UQB3 1225 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 FAM169AQ9Y6X4 670 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 ZBED4O75132 1171 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 SLC8A3P57103 927 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 USP21Q9UK80 565 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 GUCA1BQ9UMX6 200 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 UBE2Q2Q8WVN8 375 aa11.68□□□□□ -0.54
COL4A6-203ENST00000394872 TRAF5O00463 557 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 APBA3O96018 575 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 PLCD1P51178 756 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 PPP1R7Q15435 360 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 CCDC14Q49A88 953 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 PIK3AP1Q6ZUJ8 805 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 KIFAP3Q92845 792 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 RNF34Q969K3 372 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 PRIMPOLQ96LW4 560 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 BEGAINQ9BUH8 593 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 CTTNBP2Q8WZ74 1663 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 DDX39AO00148 427 aaKnown RBP11.67□□□□□ -0.54
COL4A6-203ENST00000394872 GAS8O95995 478 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 PLEKHM2Q8IWE5 1019 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 TBX22Q9Y458 520 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 STX10O60499 249 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 DEXIO95424 95 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 TCP10Q12799 353 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 SLC52A2Q9HAB3 445 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 OPA1O60313 960 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 KRT9P35527 623 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 SNX21Q969T3 373 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 TMEM87BQ96K49 555 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 TRERF1Q96PN7 1200 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 ORAI2Q96SN7 254 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 SELENOSQ9BQE4 189 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 TRIM6Q9C030 488 aaPredicted RBP11.67□□□□□ -0.54
COL4A6-203ENST00000394872 GINS2Q9Y248 185 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 A1BGP04217 495 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 SNX16P57768 344 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 KARSQ15046 597 aaKnown RBP11.67□□□□□ -0.54
COL4A6-203ENST00000394872 HAUS3Q68CZ6 603 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 G2E3Q7L622 706 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 NIM1KQ8IY84 436 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 ARFGAP3Q9NP61 516 aa11.67□□□□□ -0.54
COL4A6-203ENST00000394872 ATP2A2P16615 1042 aaKnown RBP11.66□□□□□ -0.54
COL4A6-203ENST00000394872 TRPC3Q13507 836 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 CFAP58Q5T655 872 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 NCAPH2Q6IBW4 605 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 AGTPBP1Q9UPW5 1226 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 SBNO1A3KN83 1393 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 RPS6KB1P23443 525 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 CERS3Q8IU89 383 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 KIAA1524Q8TCG1 905 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 ODF2LQ9ULJ1 636 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 ELP1O95163 1332 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 NUP153P49790 1475 aaKnown RBP11.66□□□□□ -0.54
COL4A6-203ENST00000394872 FMNL3Q8IVF7 1028 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 CALUO43852 315 aaPredicted RBP11.66□□□□□ -0.54
COL4A6-203ENST00000394872 PDE6BP35913 854 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 PDE4DQ08499 809 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 USH1GQ495M9 461 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 ARHGEF35A5YM69 484 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 DKC1O60832 514 aaKnown RBP eCLIP11.66□□□□□ -0.54
COL4A6-203ENST00000394872 SEL1L2Q5TEA6 688 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 MAEAQ7L5Y9 396 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 IFNKQ9P0W0 207 aa11.66□□□□□ -0.54
COL4A6-203ENST00000394872 LUC7L2Q9Y383 392 aaKnown RBP11.66□□□□□ -0.54
COL4A6-203ENST00000394872 SMIM23A6NLE4 172 aa11.65□□□□□ -0.54
COL4A6-203ENST00000394872 EAPPQ56P03 285 aaPredicted RBP11.65□□□□□ -0.54
COL4A6-203ENST00000394872 CCDC25Q86WR0 208 aa11.65□□□□□ -0.54
COL4A6-203ENST00000394872 KLHDC4Q8TBB5 520 aa11.65□□□□□ -0.54
COL4A6-203ENST00000394872 GOLGA1Q92805 767 aa11.65□□□□□ -0.54
COL4A6-203ENST00000394872 TSGA10Q9BZW7 698 aa11.65□□□□□ -0.54
COL4A6-203ENST00000394872 NOLC1Q14978 699 aaKnown RBP eCLIP11.65□□□□□ -0.54
COL4A6-203ENST00000394872 PPP1R9BQ96SB3 815 aa11.65□□□□□ -0.54
COL4A6-203ENST00000394872 LZTFL1Q9NQ48 299 aa11.65□□□□□ -0.54
COL4A6-203ENST00000394872 EXOC7Q9UPT5 735 aa11.65□□□□□ -0.54
COL4A6-203ENST00000394872 TXKP42681 527 aa11.65□□□□□ -0.54
COL4A6-203ENST00000394872 DBNDD2Q9BQY9 259 aa11.65□□□□□ -0.54
COL4A6-203ENST00000394872 NOC4LQ9BVI4 516 aaKnown RBP11.65□□□□□ -0.54
COL4A6-203ENST00000394872 PARD3Q8TEW0 1356 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms