RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 TRPC3Q13507 836 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 SEPT14Q6ZU15 432 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 RAB11FIP4Q86YS3 637 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 CTNNBL1Q8WYA6 563 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 TRIM47Q96LD4 638 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 EFCC1Q9HA90 598 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 PTPRMP28827 1452 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 SASH1O94885 1247 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 XRCC6P12956 609 aaKnown RBP eCLIP10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 GNA11P29992 359 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 SNAPC2Q13487 334 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 ZNF569Q5MCW4 686 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 MED10Q9BTT4 135 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 KIF9Q9HAQ2 790 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 CLIP2Q9UDT6 1046 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 CCPG1Q9ULG6 757 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 ZHX2Q9Y6X8 837 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 TIAM1Q13009 1591 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 NUP153P49790 1475 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 IL6STP40189 918 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 GABPAQ06546 454 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 CFAP100Q494V2 611 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 C8orf76Q96K31 380 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 RAB23Q9ULC3 237 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 RTL9Q8NET4 1388 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 TYW5A2RUC4 315 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 SOCS7O14512 581 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 MBD4O95243 580 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 ENOX2Q16206 610 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 FNBP1Q96RU3 617 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 GAS2L1Q99501 681 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 AKT3Q9Y243 479 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 BTDP43251 543 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 LPIN2Q92539 896 aa10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 DDX49Q9Y6V7 483 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-202ENST00000381753 CASTP20810 708 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 FKBP15Q5T1M5 1219 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 EEPD1Q7L9B9 569 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 RIOK1Q9BRS2 568 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 XPAP23025 273 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 RTN1Q16799 776 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 LARP1BQ659C4 914 aaKnown RBP10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 CACNA2D4Q7Z3S7 1137 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 SBNO2Q9Y2G9 1366 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 COL17A1Q9UMD9 1497 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 TRPA1O75762 1119 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 CTSWP56202 376 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 PGBD3Q8N328 593 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 C7orf31Q8N865 590 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 ZBTB1Q9Y2K1 713 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 MRVI1Q9Y6F6 885 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 GBP2P32456 591 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 HOOK3Q86VS8 718 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 ZNF496Q96IT1 587 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 SUGCTQ9HAC7 445 aa10.48□□□□□ -0.73
LIMCH1-202ENST00000381753 CCL15-CCL14A0A0B4J2E2 113 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 SMARCA5O60264 1052 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 EVI5O60447 810 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 CCL15Q16663 113 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 SKIDA1Q1XH10 827 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 PPFIBP1Q86W92 1011 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 ALG1Q9BT22 464 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 GBP3Q9H0R5 595 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 HAUS2Q9NVX0 235 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 PAG1Q9NWQ8 432 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 MRPL11Q9Y3B7 192 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 NDUFB9Q9Y6M9 179 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 ABCA8O94911 1581 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 DENND3A2RUS2 1198 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 BIRC3Q13489 604 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 NOP9Q86U38 636 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 RDH13Q8NBN7 331 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 ATP11BQ9Y2G3 1177 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 ACTN2P35609 894 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 SAMD9Q5K651 1589 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 GOLGA6L3A6NEY3 463 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 SLU7O95391 586 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 FAM117BQ6P1L5 589 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 ZBTB8OSQ8IWT0 167 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 GSDMBQ8TAX9 411 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 METTL22Q9BUU2 404 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 LGR6Q9HBX8 967 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 GBA2Q9HCG7 927 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 TSHZ2Q9NRE2 1034 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 MSRAQ9UJ68 235 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 FBXL21Q9UKT6 434 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 FAM50BQ9Y247 325 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 DCDC2CA8MYV0 355 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 KRT19P08727 400 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 ZNF397Q8NF99 534 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 EXOC6Q8TAG9 804 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 ORC3Q9UBD5 711 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 PARP2Q9UGN5 583 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 USP16Q9Y5T5 823 aa10.47□□□□□ -0.73
LIMCH1-202ENST00000381753 OATP04181 439 aa10.46□□□□□ -0.73
LIMCH1-202ENST00000381753 ZNRF3Q9ULT6 936 aa10.46□□□□□ -0.73
LIMCH1-202ENST00000381753 CETPP11597 493 aa10.46□□□□□ -0.73
LIMCH1-202ENST00000381753 MCM5P33992 734 aa10.46□□□□□ -0.73
LIMCH1-202ENST00000381753 MCM2P49736 904 aa10.46□□□□□ -0.73
LIMCH1-202ENST00000381753 GRAPQ13588 217 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms