RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 PTPN14Q15678 1187 aa29.32■■■□□ 2.28
C9orf40-201ENST00000376854 IMPACTQ9P2X3 320 aa29.32■■■□□ 2.28
C9orf40-201ENST00000376854 PDE8BO95263 885 aa29.32■■■□□ 2.28
C9orf40-201ENST00000376854 OSBPL5Q9H0X9 879 aaPredicted RBP29.32■■■□□ 2.28
C9orf40-201ENST00000376854 C4AP0C0L4 1744 aa29.31■■■□□ 2.28
C9orf40-201ENST00000376854 C4BP0C0L5 1744 aa29.31■■■□□ 2.28
C9orf40-201ENST00000376854 MROH7-TTC4A0A0A0MT08 1334 aa29.31■■■□□ 2.28
C9orf40-201ENST00000376854 APOA5Q6Q788 366 aa29.31■■■□□ 2.28
C9orf40-201ENST00000376854 NYAP1Q6ZVC0 841 aa29.31■■■□□ 2.28
C9orf40-201ENST00000376854 VPS37DQ86XT2 251 aa29.31■■■□□ 2.28
C9orf40-201ENST00000376854 TBC1D2BQ9UPU7 963 aa29.31■■■□□ 2.28
C9orf40-201ENST00000376854 B4E1Z4 1266 aa29.31■■■□□ 2.28
C9orf40-201ENST00000376854 SMC2O95347 1197 aa29.31■■■□□ 2.28
C9orf40-201ENST00000376854 PDE6AP16499 860 aa29.31■■■□□ 2.28
C9orf40-201ENST00000376854 CCDC102BQ68D86 513 aa29.31■■■□□ 2.28
C9orf40-201ENST00000376854 CPLX2Q6PUV4 134 aaKnown RBP29.31■■■□□ 2.28
C9orf40-201ENST00000376854 AKAP11Q9UKA4 1901 aa29.3■■■□□ 2.28
C9orf40-201ENST00000376854 PHKA1P46020 1223 aa29.3■■■□□ 2.28
C9orf40-201ENST00000376854 KRT40Q6A162 431 aa29.3■■■□□ 2.28
C9orf40-201ENST00000376854 XPO4Q9C0E2 1151 aaKnown RBP29.3■■■□□ 2.28
C9orf40-201ENST00000376854 TRMT112Q9UI30 125 aaKnown RBP29.3■■■□□ 2.28
C9orf40-201ENST00000376854 CDC27P30260 824 aa29.29■■■□□ 2.28
C9orf40-201ENST00000376854 TPM4P67936 248 aa29.29■■■□□ 2.28
C9orf40-201ENST00000376854 SENP2Q9HC62 589 aa29.29■■■□□ 2.28
C9orf40-201ENST00000376854 TRMT1Q9NXH9 659 aaKnown RBP29.29■■■□□ 2.28
C9orf40-201ENST00000376854 IFNKQ9P0W0 207 aa29.29■■■□□ 2.28
C9orf40-201ENST00000376854 TAOK2Q9UL54 1235 aa29.29■■■□□ 2.28
C9orf40-201ENST00000376854 LRP6O75581 1613 aa29.29■■■□□ 2.28
C9orf40-201ENST00000376854 MICU3Q86XE3 530 aa29.29■■■□□ 2.28
C9orf40-201ENST00000376854 CCAR2Q8N163 923 aaKnown RBP29.29■■■□□ 2.28
C9orf40-201ENST00000376854 PHKBQ93100 1093 aa29.29■■■□□ 2.28
C9orf40-201ENST00000376854 WWC3Q9ULE0 1092 aa29.29■■■□□ 2.28
C9orf40-201ENST00000376854 ARID4AP29374 1257 aaPredicted RBP29.28■■■□□ 2.28
C9orf40-201ENST00000376854 CBX1P83916 185 aa29.28■■■□□ 2.28
C9orf40-201ENST00000376854 GNL2Q13823 731 aaKnown RBP29.28■■■□□ 2.28
C9orf40-201ENST00000376854 TMEM87BQ96K49 555 aa29.28■■■□□ 2.28
C9orf40-201ENST00000376854 UQCRFS1P1P0C7P4 283 aa29.27■■■□□ 2.28
C9orf40-201ENST00000376854 SYKP43405 635 aa29.27■■■□□ 2.28
C9orf40-201ENST00000376854 NFXL1Q6ZNB6 911 aa29.27■■■□□ 2.28
C9orf40-201ENST00000376854 AIDAQ96BJ3 306 aa29.27■■■□□ 2.28
C9orf40-201ENST00000376854 TIGD1Q96MW7 591 aa29.27■■■□□ 2.28
C9orf40-201ENST00000376854 KCND1Q9NSA2 647 aa29.27■■■□□ 2.28
C9orf40-201ENST00000376854 TCRBV5S4A2TA0A5A2 114 aa29.27■■■□□ 2.28
C9orf40-201ENST00000376854 ZBTB43O43298 467 aa29.27■■■□□ 2.28
C9orf40-201ENST00000376854 JMYQ8N9B5 988 aa29.27■■■□□ 2.28
C9orf40-201ENST00000376854 IGDCC4Q8TDY8 1250 aa29.27■■■□□ 2.28
C9orf40-201ENST00000376854 PDE8AO60658 829 aa29.26■■■□□ 2.27
C9orf40-201ENST00000376854 PPP6R2O75170 966 aa29.26■■■□□ 2.27
C9orf40-201ENST00000376854 NCAPHQ15003 741 aa29.26■■■□□ 2.27
C9orf40-201ENST00000376854 TMC6Q7Z403 805 aa29.26■■■□□ 2.27
C9orf40-201ENST00000376854 STRBPQ96SI9 672 aaKnown RBP29.26■■■□□ 2.27
C9orf40-201ENST00000376854 UBN2Q6ZU65 1347 aa29.26■■■□□ 2.27
C9orf40-201ENST00000376854 EXOC5O00471 708 aa29.25■■■□□ 2.27
C9orf40-201ENST00000376854 U2AF2P26368 475 aaKnown RBP eCLIP29.25■■■□□ 2.27
C9orf40-201ENST00000376854 LY9Q9HBG7 655 aa29.25■■■□□ 2.27
C9orf40-201ENST00000376854 PRDM10Q9NQV6 1147 aa29.25■■■□□ 2.27
C9orf40-201ENST00000376854 IARSP41252 1262 aaKnown RBP29.25■■■□□ 2.27
C9orf40-201ENST00000376854 PTPAQ15257 358 aa29.25■■■□□ 2.27
C9orf40-201ENST00000376854 TMEM67Q5HYA8 995 aa29.25■■■□□ 2.27
C9orf40-201ENST00000376854 ISM2Q6H9L7 571 aa29.25■■■□□ 2.27
C9orf40-201ENST00000376854 CCDC150Q8NCX0 1101 aa29.25■■■□□ 2.27
C9orf40-201ENST00000376854 HPSEQ9Y251 543 aa29.25■■■□□ 2.27
C9orf40-201ENST00000376854 GOLGA8AA7E2F4 631 aa29.24■■■□□ 2.27
C9orf40-201ENST00000376854 NAA30Q147X3 362 aaPredicted RBP29.24■■■□□ 2.27
C9orf40-201ENST00000376854 PUM3Q15397 648 aaKnown RBP29.24■■■□□ 2.27
C9orf40-201ENST00000376854 NTRK3Q16288 839 aa29.24■■■□□ 2.27
C9orf40-201ENST00000376854 SHC4Q6S5L8 630 aa29.24■■■□□ 2.27
C9orf40-201ENST00000376854 DZIP3Q86Y13 1208 aaKnown RBP29.24■■■□□ 2.27
C9orf40-201ENST00000376854 TRIM29Q14134 588 aa29.23■■■□□ 2.27
C9orf40-201ENST00000376854 SGMS1Q86VZ5 419 aa29.23■■■□□ 2.27
C9orf40-201ENST00000376854 HELBQ8NG08 1087 aaPredicted RBP29.23■■■□□ 2.27
C9orf40-201ENST00000376854 LPIN2Q92539 896 aa29.23■■■□□ 2.27
C9orf40-201ENST00000376854 MAP3K14Q99558 947 aa29.23■■■□□ 2.27
C9orf40-201ENST00000376854 MYL10Q9BUA6 226 aa29.23■■■□□ 2.27
C9orf40-201ENST00000376854 INCENPQ9NQS7 918 aa29.23■■■□□ 2.27
C9orf40-201ENST00000376854 IKBKBO14920 756 aa29.23■■■□□ 2.27
C9orf40-201ENST00000376854 ALX1Q15699 326 aa29.23■■■□□ 2.27
C9orf40-201ENST00000376854 TUBE1Q9UJT0 475 aa29.23■■■□□ 2.27
C9orf40-201ENST00000376854 RANBP6O60518 1105 aaKnown RBP29.22■■■□□ 2.27
C9orf40-201ENST00000376854 ARMCX5Q6P1M9 558 aa29.22■■■□□ 2.27
C9orf40-201ENST00000376854 COL14A1Q05707 1796 aaKnown RBP29.22■■■□□ 2.27
C9orf40-201ENST00000376854 SPDYE4A6NLX3 237 aa29.22■■■□□ 2.27
C9orf40-201ENST00000376854 FAM217BQ9NTX9 383 aaPredicted RBP29.22■■■□□ 2.27
C9orf40-201ENST00000376854 ANKRD36CQ5JPF3 1778 aa29.22■■■□□ 2.27
C9orf40-201ENST00000376854 PATL2C9JE40 543 aaKnown RBP29.21■■■□□ 2.27
C9orf40-201ENST00000376854 SFPQP23246 707 aaKnown RBP eCLIP29.21■■■□□ 2.27
C9orf40-201ENST00000376854 LMOD1P29536 600 aaPredicted RBP29.21■■■□□ 2.27
C9orf40-201ENST00000376854 MROH5Q6ZUA9 1318 aa29.21■■■□□ 2.27
C9orf40-201ENST00000376854 SPATA5Q8NB90 893 aa29.21■■■□□ 2.27
C9orf40-201ENST00000376854 NAPBQ9H115 298 aa29.21■■■□□ 2.27
C9orf40-201ENST00000376854 EPB41L4AQ9HCS5 686 aaPredicted RBP29.21■■■□□ 2.27
C9orf40-201ENST00000376854 NUP98P52948 1817 aa29.21■■■□□ 2.27
C9orf40-201ENST00000376854 FGFR2P21802 821 aa29.2■■■□□ 2.27
C9orf40-201ENST00000376854 FANCCQ00597 558 aa29.2■■■□□ 2.27
C9orf40-201ENST00000376854 RESP18Q5W5W9 173 aa29.2■■■□□ 2.27
C9orf40-201ENST00000376854 IFNL3Q8IZI9 196 aa29.2■■■□□ 2.27
C9orf40-201ENST00000376854 KIF18AQ8NI77 898 aa29.2■■■□□ 2.27
C9orf40-201ENST00000376854 GNL3Q9BVP2 549 aaKnown RBP eCLIP29.2■■■□□ 2.27
C9orf40-201ENST00000376854 SLIT2O94813 1529 aa29.2■■■□□ 2.27
C9orf40-201ENST00000376854 CTDSPL2Q05D32 466 aa29.2■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms