RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 RALYLQ86SE5 291 aaKnown RBP16.29■□□□□ 0.2
PTPRF-202ENST00000372405 ZNF622Q969S3 477 aaKnown RBP eCLIP16.29■□□□□ 0.2
PTPRF-202ENST00000372405 NACAP1Q9BZK3 213 aa16.29■□□□□ 0.2
PTPRF-202ENST00000372405 WDR19Q8NEZ3 1342 aa16.29■□□□□ 0.2
PTPRF-202ENST00000372405 PFKFB2O60825 505 aa16.29■□□□□ 0.2
PTPRF-202ENST00000372405 CHRNA5P30532 468 aa16.29■□□□□ 0.2
PTPRF-202ENST00000372405 SPTY2D1Q68D10 685 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-202ENST00000372405 AATFQ9NY61 560 aaKnown RBP eCLIP16.29■□□□□ 0.2
PTPRF-202ENST00000372405 DDX11L8A8MPP1 907 aa16.28■□□□□ 0.2
PTPRF-202ENST00000372405 B4E1Z4 1266 aa16.28■□□□□ 0.2
PTPRF-202ENST00000372405 LDHBP07195 334 aaKnown RBP16.28■□□□□ 0.2
PTPRF-202ENST00000372405 STYK1Q6J9G0 422 aa16.28■□□□□ 0.2
PTPRF-202ENST00000372405 DZIP1Q86YF9 867 aaKnown RBP16.28■□□□□ 0.2
PTPRF-202ENST00000372405 STX6O43752 255 aa16.27■□□□□ 0.2
PTPRF-202ENST00000372405 PDIA3P30101 505 aaKnown RBP16.27■□□□□ 0.2
PTPRF-202ENST00000372405 DIXDC1Q155Q3 683 aa16.27■□□□□ 0.2
PTPRF-202ENST00000372405 AKNAD1Q5T1N1 836 aa16.27■□□□□ 0.2
PTPRF-202ENST00000372405 MPNDQ8N594 471 aa16.27■□□□□ 0.2
PTPRF-202ENST00000372405 BRPF3Q9ULD4 1205 aa16.27■□□□□ 0.2
PTPRF-202ENST00000372405 TCHHQ07283 1943 aa16.27■□□□□ 0.2
PTPRF-202ENST00000372405 LAMB1P07942 1786 aa16.27■□□□□ 0.2
PTPRF-202ENST00000372405 WDR33Q9C0J8 1336 aaKnown RBP16.27■□□□□ 0.2
PTPRF-202ENST00000372405 CDK5RAP2Q96SN8 1893 aa16.27■□□□□ 0.19
PTPRF-202ENST00000372405 H0YIN7 160 aa16.27■□□□□ 0.19
PTPRF-202ENST00000372405 RIMBP2O15034 1052 aa16.27■□□□□ 0.19
PTPRF-202ENST00000372405 JAK2O60674 1132 aa16.27■□□□□ 0.19
PTPRF-202ENST00000372405 TRDNQ13061 729 aa16.27■□□□□ 0.19
PTPRF-202ENST00000372405 TMED8Q6PL24 325 aaPredicted RBP16.27■□□□□ 0.19
PTPRF-202ENST00000372405 STAG1Q8WVM7 1258 aa16.27■□□□□ 0.19
PTPRF-202ENST00000372405 ZNF274Q96GC6 653 aaPredicted RBP16.27■□□□□ 0.19
PTPRF-202ENST00000372405 DLEC1Q9Y238 1755 aa16.26■□□□□ 0.19
PTPRF-202ENST00000372405 CTDNEP1O95476 244 aa16.26■□□□□ 0.19
PTPRF-202ENST00000372405 PPARAQ07869 468 aa16.26■□□□□ 0.19
PTPRF-202ENST00000372405 DPP8Q6V1X1 898 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-202ENST00000372405 CYP2D7A0A087X1C5 515 aa16.26■□□□□ 0.19
PTPRF-202ENST00000372405 IGSF3O75054 1194 aa16.26■□□□□ 0.19
PTPRF-202ENST00000372405 CCT2P78371 535 aaKnown RBP16.26■□□□□ 0.19
PTPRF-202ENST00000372405 EVX2Q03828 476 aa16.26■□□□□ 0.19
PTPRF-202ENST00000372405 SENP2Q9HC62 589 aa16.26■□□□□ 0.19
PTPRF-202ENST00000372405 NCOA5Q9HCD5 579 aaKnown RBP16.26■□□□□ 0.19
PTPRF-202ENST00000372405 ZSWIM5Q9P217 1185 aa16.26■□□□□ 0.19
PTPRF-202ENST00000372405 ANAPC4Q9UJX5 808 aa16.26■□□□□ 0.19
PTPRF-202ENST00000372405 HPS5Q9UPZ3 1129 aa16.26■□□□□ 0.19
PTPRF-202ENST00000372405 MTMR6Q9Y217 621 aa16.26■□□□□ 0.19
PTPRF-202ENST00000372405 C10orf71Q711Q0 1435 aa16.25■□□□□ 0.19
PTPRF-202ENST00000372405 FAM205AQ6ZU69 1335 aa16.25■□□□□ 0.19
PTPRF-202ENST00000372405 ZSCAN22P10073 491 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-202ENST00000372405 MCTP1Q6DN14 999 aa16.25■□□□□ 0.19
PTPRF-202ENST00000372405 GIMAP6Q6P9H5 292 aa16.25■□□□□ 0.19
PTPRF-202ENST00000372405 STK11IPQ8N1F8 1099 aa16.25■□□□□ 0.19
PTPRF-202ENST00000372405 NSUN7Q8NE18 718 aaKnown RBP16.25■□□□□ 0.19
PTPRF-202ENST00000372405 SMARCC2Q8TAQ2 1214 aa16.25■□□□□ 0.19
PTPRF-202ENST00000372405 COA1Q9GZY4 146 aa16.25■□□□□ 0.19
PTPRF-202ENST00000372405 DCP1AQ9NPI6 582 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-202ENST00000372405 SNED1Q8TER0 1413 aa16.25■□□□□ 0.19
PTPRF-202ENST00000372405 MINDY4BA8MYZ0 360 aa16.24■□□□□ 0.19
PTPRF-202ENST00000372405 SH2B2O14492 632 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-202ENST00000372405 TRAK2O60296 914 aa16.24■□□□□ 0.19
PTPRF-202ENST00000372405 KDM4AO75164 1064 aa16.24■□□□□ 0.19
PTPRF-202ENST00000372405 MFSD14BQ5SR56 506 aa16.24■□□□□ 0.19
PTPRF-202ENST00000372405 CTR9Q6PD62 1173 aa16.24■□□□□ 0.19
PTPRF-202ENST00000372405 MFSD6Q6ZSS7 791 aa16.24■□□□□ 0.19
PTPRF-202ENST00000372405 IGDCC4Q8TDY8 1250 aa16.24■□□□□ 0.19
PTPRF-202ENST00000372405 C7orf43Q8WVR3 580 aa16.24■□□□□ 0.19
PTPRF-202ENST00000372405 KLF18A0A0U1RQI7 1052 aa16.24■□□□□ 0.19
PTPRF-202ENST00000372405 RTFDC1Q9BY42 306 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-202ENST00000372405 CRNKL1Q9BZJ0 848 aaKnown RBP16.24■□□□□ 0.19
PTPRF-202ENST00000372405 ZC3H12CQ9C0D7 883 aaKnown RBP16.24■□□□□ 0.19
PTPRF-202ENST00000372405 ANGEL1Q9UNK9 670 aaKnown RBP16.24■□□□□ 0.19
PTPRF-202ENST00000372405 MROH7-TTC4A0A0A0MT08 1334 aa16.23■□□□□ 0.19
PTPRF-202ENST00000372405 ZNF646O15015 1829 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-202ENST00000372405 GTF2IP78347 998 aa16.23■□□□□ 0.19
PTPRF-202ENST00000372405 SH3RF3Q8TEJ3 882 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-202ENST00000372405 LLPHQ9BRT6 129 aaKnown RBP16.23■□□□□ 0.19
PTPRF-202ENST00000372405 CNNM2Q9H8M5 875 aa16.23■□□□□ 0.19
PTPRF-202ENST00000372405 MKRN1Q9UHC7 482 aaKnown RBP16.23■□□□□ 0.19
PTPRF-202ENST00000372405 NAP1L2Q9ULW6 460 aaPredicted RBP16.23■□□□□ 0.19
PTPRF-202ENST00000372405 SCN9AQ15858 1988 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 USP17L12C9JPN9 530 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 USP17L21D6R901 530 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 F13A1P00488 732 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 GSTO1P78417 241 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 DOK7Q18PE1 504 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 LARP1BQ659C4 914 aaKnown RBP16.22■□□□□ 0.19
PTPRF-202ENST00000372405 RAB11FIP4Q86YS3 637 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 KRT23Q9C075 422 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 LY9Q9HBG7 655 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 ATP8A2Q9NTI2 1148 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 LMBRD1Q9NUN5 540 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 KIF13BQ9NQT8 1826 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 PPP4CP60510 307 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 FOXD4L6Q3SYB3 417 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-202ENST00000372405 RRP12Q5JTH9 1297 aaKnown RBP16.22■□□□□ 0.19
PTPRF-202ENST00000372405 FOXD4L3Q6VB84 417 aaPredicted RBP16.22■□□□□ 0.19
PTPRF-202ENST00000372405 CERS5Q8N5B7 392 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 TBC1D22AQ8WUA7 517 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 CNKSR1Q969H4 720 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 DDX11Q96FC9 970 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 TMEM87BQ96K49 555 aa16.22■□□□□ 0.19
PTPRF-202ENST00000372405 ZNF219Q9P2Y4 722 aaPredicted RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms