RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 CRY2Q49AN0 593 aa16.41■□□□□ 0.22
USF1-202ENST00000368020 HELBQ8NG08 1087 aaPredicted RBP16.41■□□□□ 0.22
USF1-202ENST00000368020 DDX11Q96FC9 970 aa16.41■□□□□ 0.22
USF1-202ENST00000368020 BSDC1Q9NW68 430 aaPredicted RBP16.41■□□□□ 0.22
USF1-202ENST00000368020 ANGEL1Q9UNK9 670 aaKnown RBP16.41■□□□□ 0.22
USF1-202ENST00000368020 CPLX1O14810 134 aa16.4■□□□□ 0.22
USF1-202ENST00000368020 CPLX2Q6PUV4 134 aaKnown RBP16.4■□□□□ 0.22
USF1-202ENST00000368020 ZSCAN30Q86W11 494 aa16.4■□□□□ 0.22
USF1-202ENST00000368020 MTA3Q9BTC8 594 aa16.4■□□□□ 0.22
USF1-202ENST00000368020 NUP62CLQ9H1M0 184 aa16.4■□□□□ 0.22
USF1-202ENST00000368020 ZNF804BA4D1E1 1349 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 KLF18A0A0U1RQI7 1052 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 GOLGA8BA8MQT2 603 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 CCT2P78371 535 aaKnown RBP16.39■□□□□ 0.21
USF1-202ENST00000368020 MAGEB6Q8N7X4 407 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 KRT23Q9C075 422 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 NAPBQ9H115 298 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 WWC3Q9ULE0 1092 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 MYH13Q9UKX3 1938 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 SEMA3EO15041 775 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 MAP3K11Q16584 847 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 CAVIN4Q5BKX8 364 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 C3orf67Q6ZVT6 689 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 RRAGDQ9NQL2 400 aaPredicted RBP16.39■□□□□ 0.21
USF1-202ENST00000368020 CCDC39Q9UFE4 941 aa16.39■□□□□ 0.21
USF1-202ENST00000368020 PDS5AQ29RF7 1337 aaKnown RBP16.38■□□□□ 0.21
USF1-202ENST00000368020 A0A0G2JLW4 131 aa16.38■□□□□ 0.21
USF1-202ENST00000368020 ZBTB22O15209 634 aa16.38■□□□□ 0.21
USF1-202ENST00000368020 IGSF3O75054 1194 aa16.38■□□□□ 0.21
USF1-202ENST00000368020 CAVIN2O95810 425 aa16.38■□□□□ 0.21
USF1-202ENST00000368020 MSNP26038 577 aaKnown RBP16.38■□□□□ 0.21
USF1-202ENST00000368020 PDE6BP35913 854 aa16.38■□□□□ 0.21
USF1-202ENST00000368020 BRAPQ7Z569 592 aa16.38■□□□□ 0.21
USF1-202ENST00000368020 HOXA10P31260 410 aaPredicted RBP16.37■□□□□ 0.21
USF1-202ENST00000368020 ANTXR2P58335 489 aa16.37■□□□□ 0.21
USF1-202ENST00000368020 CHST3Q7LGC8 479 aa16.37■□□□□ 0.21
USF1-202ENST00000368020 CCDC24Q8N4L8 307 aa16.37■□□□□ 0.21
USF1-202ENST00000368020 RNF214Q8ND24 703 aa16.37■□□□□ 0.21
USF1-202ENST00000368020 FUCA2Q9BTY2 467 aa16.37■□□□□ 0.21
USF1-202ENST00000368020 RNF41Q9H4P4 317 aaPredicted RBP16.37■□□□□ 0.21
USF1-202ENST00000368020 LRP2BPQ9P2M1 347 aa16.37■□□□□ 0.21
USF1-202ENST00000368020 TNRC6CQ9HCJ0 1690 aaKnown RBP16.37■□□□□ 0.21
USF1-202ENST00000368020 ANKRD31Q8N7Z5 1873 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 CTAGE5O15320 804 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 MBD4O95243 580 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 POLD1P28340 1107 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 LIFRP42702 1097 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 SART3Q15020 963 aaKnown RBP16.36■□□□□ 0.21
USF1-202ENST00000368020 SGMS1Q86VZ5 419 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 IFNL3Q8IZI9 196 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 BICD2Q8TD16 824 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 C8orf76Q96K31 380 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 NCOA5Q9HCD5 579 aaKnown RBP16.36■□□□□ 0.21
USF1-202ENST00000368020 RCOR1Q9UKL0 485 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 DENND2AQ9ULE3 1009 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 SH2B2O14492 632 aaPredicted RBP16.36■□□□□ 0.21
USF1-202ENST00000368020 ZBTB7AO95365 584 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 BCAMP50895 628 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 RCAN1P53805 252 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 TBC1D10CQ8IV04 446 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 ANKRD2Q9GZV1 360 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 NBPF3Q9H094 633 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 TNMDQ9H2S6 317 aa16.36■□□□□ 0.21
USF1-202ENST00000368020 TFIP11Q9UBB9 837 aaKnown RBP16.36■□□□□ 0.21
USF1-202ENST00000368020 RPS8P62241 208 aaKnown RBP16.35■□□□□ 0.21
USF1-202ENST00000368020 FAM173BQ6P4H8 233 aa16.35■□□□□ 0.21
USF1-202ENST00000368020 RBM43Q6ZSC3 357 aaKnown RBP16.35■□□□□ 0.21
USF1-202ENST00000368020 TMTC2Q8N394 836 aa16.35■□□□□ 0.21
USF1-202ENST00000368020 RPGRQ92834 1020 aaKnown RBP16.35■□□□□ 0.21
USF1-202ENST00000368020 CRAMP1Q96RY5 1269 aa16.35■□□□□ 0.21
USF1-202ENST00000368020 CLSTN2Q9H4D0 955 aa16.35■□□□□ 0.21
USF1-202ENST00000368020 ORC3Q9UBD5 711 aaPredicted RBP16.35■□□□□ 0.21
USF1-202ENST00000368020 HPS5Q9UPZ3 1129 aa16.35■□□□□ 0.21
USF1-202ENST00000368020 NID2Q14112 1375 aa16.35■□□□□ 0.21
USF1-202ENST00000368020 PSDA5PKW4 1024 aaPredicted RBP16.34■□□□□ 0.21
USF1-202ENST00000368020 SRGNP10124 158 aa16.34■□□□□ 0.21
USF1-202ENST00000368020 METAP2P50579 478 aaKnown RBP eCLIP16.34■□□□□ 0.21
USF1-202ENST00000368020 AKNAD1Q5T1N1 836 aa16.34■□□□□ 0.21
USF1-202ENST00000368020 GIMAP6Q6P9H5 292 aa16.34■□□□□ 0.21
USF1-202ENST00000368020 MFSD6Q6ZSS7 791 aa16.34■□□□□ 0.21
USF1-202ENST00000368020 VPS37DQ86XT2 251 aa16.34■□□□□ 0.21
USF1-202ENST00000368020 FBXO18Q8NFZ0 1043 aa16.34■□□□□ 0.21
USF1-202ENST00000368020 STAG1Q8WVM7 1258 aa16.34■□□□□ 0.21
USF1-202ENST00000368020 SGIP1Q9BQI5 828 aa16.34■□□□□ 0.21
USF1-202ENST00000368020 DACT1Q9NYF0 836 aa16.34■□□□□ 0.21
USF1-202ENST00000368020 NOL7Q9UMY1 257 aaKnown RBP16.34■□□□□ 0.21
USF1-202ENST00000368020 MAST2Q6P0Q8 1798 aa16.34■□□□□ 0.21
USF1-202ENST00000368020 PCP11498 1178 aaKnown RBP16.33■□□□□ 0.21
USF1-202ENST00000368020 TDO2P48775 406 aa16.33■□□□□ 0.21
USF1-202ENST00000368020 SYNE3Q6ZMZ3 975 aa16.33■□□□□ 0.21
USF1-202ENST00000368020 C10orf71Q711Q0 1435 aa16.33■□□□□ 0.21
USF1-202ENST00000368020 RBM17Q96I25 401 aaKnown RBP16.33■□□□□ 0.21
USF1-202ENST00000368020 CCDC88AQ3V6T2 1871 aa16.33■□□□□ 0.2
USF1-202ENST00000368020 GSG1L2A8MUP6 293 aa16.33■□□□□ 0.2
USF1-202ENST00000368020 DTNBO60941 627 aa16.33■□□□□ 0.2
USF1-202ENST00000368020 FDPSP14324 419 aaKnown RBP16.33■□□□□ 0.2
USF1-202ENST00000368020 NPR1P16066 1061 aa16.33■□□□□ 0.2
USF1-202ENST00000368020 LIG1P18858 919 aa16.33■□□□□ 0.2
USF1-202ENST00000368020 ADD1P35611 737 aaKnown RBP16.33■□□□□ 0.2
USF1-202ENST00000368020 GRAPQ13588 217 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms