RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 G2E3Q7L622 706 aa20.27■□□□□ 0.83
COL18A1-202ENST00000355480 PARD3Q8TEW0 1356 aa20.27■□□□□ 0.83
COL18A1-202ENST00000355480 SMTNP53814 917 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 MAK16Q9BXY0 300 aaKnown RBP20.26■□□□□ 0.83
COL18A1-202ENST00000355480 PPP1R7Q15435 360 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 DPP8Q6V1X1 898 aaPredicted RBP20.26■□□□□ 0.83
COL18A1-202ENST00000355480 SELENOSQ9BQE4 189 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 FAM169AQ9Y6X4 670 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 DEXIO95424 95 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 ATRIPQ8WXE1 791 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 TMEM87BQ96K49 555 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 CPA1P15085 419 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 PIK3AP1Q6ZUJ8 805 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 GOLGA1Q92805 767 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 BRDTQ58F21 947 aaPredicted RBP20.26■□□□□ 0.83
COL18A1-202ENST00000355480 ZNF569Q5MCW4 686 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 KIAA1524Q8TCG1 905 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 CCDC114Q96M63 670 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 ELP1O95163 1332 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 TRAPPC8Q9Y2L5 1435 aa20.26■□□□□ 0.83
COL18A1-202ENST00000355480 A0A1B0GVL5 298 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 DYNC1I1O14576 645 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 LARGE2Q8N3Y3 721 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 CCNT1O60563 726 aaKnown RBP20.25■□□□□ 0.83
COL18A1-202ENST00000355480 ZNF594Q96JF6 807 aaPredicted RBP20.25■□□□□ 0.83
COL18A1-202ENST00000355480 DBNDD2Q9BQY9 259 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 SRRTQ9BXP5 876 aaKnown RBP20.25■□□□□ 0.83
COL18A1-202ENST00000355480 SMIM23A6NLE4 172 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 ATP2A2P16615 1042 aaKnown RBP20.25■□□□□ 0.83
COL18A1-202ENST00000355480 HSPA4P34932 840 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 CCDC6Q16204 474 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 RILPL1Q5EBL4 403 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 FMNL3Q8IVF7 1028 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 IVNS1ABPQ9Y6Y0 642 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 ZMYM3Q14202 1370 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 ZBTB16Q05516 673 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 CCDC25Q86WR0 208 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 KLHDC4Q8TBB5 520 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 ZFP91Q96JP5 570 aaPredicted RBP20.25■□□□□ 0.83
COL18A1-202ENST00000355480 GPHNQ9NQX3 736 aaPredicted RBP20.25■□□□□ 0.83
COL18A1-202ENST00000355480 H0YIN7 160 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 INTS4Q96HW7 963 aaKnown RBP20.25■□□□□ 0.83
COL18A1-202ENST00000355480 CTNND2Q9UQB3 1225 aa20.25■□□□□ 0.83
COL18A1-202ENST00000355480 PRDM1O75626 825 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 RPS6KB1P23443 525 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 PRIM1P49642 420 aaKnown RBP20.24■□□□□ 0.83
COL18A1-202ENST00000355480 AATFQ9NY61 560 aaKnown RBP eCLIP20.24■□□□□ 0.831e-5■■■□□ 15.6
COL18A1-202ENST00000355480 STX10O60499 249 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 TUBB4AP04350 444 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 PDE4DQ08499 809 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 HAUS3Q68CZ6 603 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 WDR66Q8TBY9 1149 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 DDX23Q9BUQ8 820 aaKnown RBP20.24■□□□□ 0.83
COL18A1-202ENST00000355480 TAF5LO75529 589 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 MYCLP12524 364 aaPredicted RBP20.24■□□□□ 0.83
COL18A1-202ENST00000355480 IFT81Q8WYA0 676 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 TTC14Q96N46 770 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 MTUS1Q9ULD2 1270 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 V9GY48 417 aaPredicted RBP20.24■□□□□ 0.83
COL18A1-202ENST00000355480 IFT74Q96LB3 600 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 NOC4LQ9BVI4 516 aaKnown RBP20.24■□□□□ 0.83
COL18A1-202ENST00000355480 CARD14Q9BXL6 1004 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 TBX22Q9Y458 520 aa20.24■□□□□ 0.83
COL18A1-202ENST00000355480 SLC8A3P57103 927 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 CCDC14Q49A88 953 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 NOP56O00567 594 aaKnown RBP20.23■□□□□ 0.83
COL18A1-202ENST00000355480 ATL3Q6DD88 541 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 KIFAP3Q92845 792 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 FAM98CQ17RN3 349 aaKnown RBP20.23■□□□□ 0.83
COL18A1-202ENST00000355480 LEO1Q8WVC0 666 aaPredicted RBP20.23■□□□□ 0.83
COL18A1-202ENST00000355480 USP26Q9BXU7 913 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 CCDC87Q9NVE4 849 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 MTRF1LQ9UGC7 380 aaKnown RBP20.23■□□□□ 0.83
COL18A1-202ENST00000355480 GINS2Q9Y248 185 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 APPBP2Q92624 585 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 SLU7O95391 586 aaKnown RBP20.23■□□□□ 0.83
COL18A1-202ENST00000355480 C8orf34Q49A92 452 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 SEL1L2Q5TEA6 688 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 CNGA4Q8IV77 575 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 KRT222Q8N1A0 295 aa20.23■□□□□ 0.83
COL18A1-202ENST00000355480 ITSN2Q9NZM3 1697 aa20.22■□□□□ 0.83
COL18A1-202ENST00000355480 A1BGP04217 495 aa20.22■□□□□ 0.83
COL18A1-202ENST00000355480 PPP1R2P41236 205 aa20.22■□□□□ 0.83
COL18A1-202ENST00000355480 GPAA1O43292 621 aa20.22■□□□□ 0.83
COL18A1-202ENST00000355480 MYL5Q02045 173 aa20.22■□□□□ 0.83
COL18A1-202ENST00000355480 STRN3Q13033 797 aa20.22■□□□□ 0.83
COL18A1-202ENST00000355480 SMC6Q96SB8 1091 aa20.22■□□□□ 0.83
COL18A1-202ENST00000355480 TXKP42681 527 aa20.22■□□□□ 0.83
COL18A1-202ENST00000355480 PRKG1Q13976 671 aa20.22■□□□□ 0.83
COL18A1-202ENST00000355480 CALCOCO2Q13137 446 aa20.22■□□□□ 0.83
COL18A1-202ENST00000355480 PKNOX2Q96KN3 472 aa20.22■□□□□ 0.83
COL18A1-202ENST00000355480 SNX16P57768 344 aa20.21■□□□□ 0.83
COL18A1-202ENST00000355480 CCDC24Q8N4L8 307 aa20.21■□□□□ 0.83
COL18A1-202ENST00000355480 SLC27A2O14975 620 aa20.21■□□□□ 0.83
COL18A1-202ENST00000355480 PSMC4P43686 418 aa20.21■□□□□ 0.83
COL18A1-202ENST00000355480 SMC5Q8IY18 1101 aa20.21■□□□□ 0.83
COL18A1-202ENST00000355480 TLDC2A0PJX2 215 aa20.21■□□□□ 0.83
COL18A1-202ENST00000355480 TNNC1P63316 161 aa20.21■□□□□ 0.83
COL18A1-202ENST00000355480 TSGA10Q9BZW7 698 aa20.21■□□□□ 0.83
COL18A1-202ENST00000355480 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.21■□□□□ 0.831e-7■■□□□ 13.7
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms