RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 COL5A2P05997 1499 aaPredicted RBP25.8■■□□□ 1.72
TRIM28-202ENST00000341753 FOXP2O15409 715 aa25.8■■□□□ 1.72
TRIM28-202ENST00000341753 FANCLQ9NW38 375 aa25.8■■□□□ 1.72
TRIM28-202ENST00000341753 CALCOCO1Q9P1Z2 691 aa25.8■■□□□ 1.72
TRIM28-202ENST00000341753 DENND2AQ9ULE3 1009 aa25.8■■□□□ 1.72
TRIM28-202ENST00000341753 CCDC34Q96HJ3 373 aa25.79■■□□□ 1.72
TRIM28-202ENST00000341753 A0A1B0GUL7 405 aa25.79■■□□□ 1.72
TRIM28-202ENST00000341753 TOP1P11387 765 aaKnown RBP25.79■■□□□ 1.72
TRIM28-202ENST00000341753 GNL2Q13823 731 aaKnown RBP25.79■■□□□ 1.72
TRIM28-202ENST00000341753 BRAPQ7Z569 592 aa25.79■■□□□ 1.72
TRIM28-202ENST00000341753 ZKSCAN7Q9P0L1 754 aaPredicted RBP25.79■■□□□ 1.72
TRIM28-202ENST00000341753 IKBKBO14920 756 aa25.79■■□□□ 1.72
TRIM28-202ENST00000341753 SASH3O75995 380 aa25.79■■□□□ 1.72
TRIM28-202ENST00000341753 ANTXR2P58335 489 aa25.79■■□□□ 1.72
TRIM28-202ENST00000341753 MYL5Q02045 173 aa25.79■■□□□ 1.72
TRIM28-202ENST00000341753 PDILTQ8N807 584 aa25.79■■□□□ 1.72
TRIM28-202ENST00000341753 WDR24Q96S15 920 aa25.79■■□□□ 1.72
TRIM28-202ENST00000341753 VWA3AA6NCI4 1184 aa25.78■■□□□ 1.72
TRIM28-202ENST00000341753 SHC4Q6S5L8 630 aa25.78■■□□□ 1.72
TRIM28-202ENST00000341753 FGAP02671 866 aa25.78■■□□□ 1.72
TRIM28-202ENST00000341753 ST5P78524 1137 aa25.78■■□□□ 1.72
TRIM28-202ENST00000341753 ASAP1Q9ULH1 1129 aa25.78■■□□□ 1.72
TRIM28-202ENST00000341753 ERVV-2B6SEH9 535 aa25.77■■□□□ 1.72
TRIM28-202ENST00000341753 IMMTQ16891 758 aaKnown RBP25.77■■□□□ 1.72
TRIM28-202ENST00000341753 TEX35Q5T0J7 233 aa25.77■■□□□ 1.72
TRIM28-202ENST00000341753 SOS2Q07890 1332 aaPredicted RBP25.77■■□□□ 1.72
TRIM28-202ENST00000341753 VSTM4Q8IW00 320 aa25.77■■□□□ 1.72
TRIM28-202ENST00000341753 NKX2-3Q8TAU0 364 aa25.77■■□□□ 1.72
TRIM28-202ENST00000341753 PPP2R2CQ9Y2T4 447 aa25.77■■□□□ 1.72
TRIM28-202ENST00000341753 GNG11P61952 73 aa25.76■■□□□ 1.71
TRIM28-202ENST00000341753 SLC39A14Q15043 492 aa25.76■■□□□ 1.71
TRIM28-202ENST00000341753 LRRFIP1Q32MZ4 808 aaKnown RBP25.76■■□□□ 1.71
TRIM28-202ENST00000341753 SYNE4Q8N205 404 aa25.76■■□□□ 1.71
TRIM28-202ENST00000341753 INTS13Q9NVM9 706 aa25.76■■□□□ 1.71
TRIM28-202ENST00000341753 FOXN1O15353 648 aa25.76■■□□□ 1.71
TRIM28-202ENST00000341753 CCP110O43303 1012 aa25.76■■□□□ 1.71
TRIM28-202ENST00000341753 DHX16O60231 1041 aaKnown RBP25.76■■□□□ 1.71
TRIM28-202ENST00000341753 CDK11BP21127 795 aaKnown RBP25.76■■□□□ 1.71
TRIM28-202ENST00000341753 SPECC1Q5M775 1068 aa25.76■■□□□ 1.71
TRIM28-202ENST00000341753 CDC27P30260 824 aa25.75■■□□□ 1.71
TRIM28-202ENST00000341753 PDE4BQ07343 736 aa25.75■■□□□ 1.71
TRIM28-202ENST00000341753 MB21D2Q8IYB1 491 aaPredicted RBP25.75■■□□□ 1.71
TRIM28-202ENST00000341753 TUBE1Q9UJT0 475 aa25.75■■□□□ 1.71
TRIM28-202ENST00000341753 ADORA1P30542 326 aa25.75■■□□□ 1.71
TRIM28-202ENST00000341753 CARD10Q9BWT7 1032 aa25.75■■□□□ 1.71
TRIM28-202ENST00000341753 KCPQ6ZWJ8 1503 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 EFCAB8A8MWE9 144 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 CAPN2P17655 700 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 PI16Q6UXB8 463 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 RALYLQ86SE5 291 aaKnown RBP25.74■■□□□ 1.71
TRIM28-202ENST00000341753 TMEM139Q8IV31 216 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 FOXP4Q8IVH2 680 aaPredicted RBP25.74■■□□□ 1.71
TRIM28-202ENST00000341753 PHKBQ93100 1093 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 CBFA2T2O43439 604 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 TUBB4AP04350 444 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 GYS2P54840 703 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 ADKP55263 362 aaKnown RBP25.74■■□□□ 1.71
TRIM28-202ENST00000341753 LONRF3Q496Y0 759 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 TOGARAM2Q6ZUX3 1019 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 VPS37DQ86XT2 251 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 DNAJC10Q8IXB1 793 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 FAM89AQ96GI7 184 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 ALG1Q9BT22 464 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 KAT6BQ8WYB5 2073 aa25.74■■□□□ 1.71
TRIM28-202ENST00000341753 TBC1D8O95759 1140 aa25.73■■□□□ 1.71
TRIM28-202ENST00000341753 OAS2P29728 719 aaKnown RBP25.73■■□□□ 1.71
TRIM28-202ENST00000341753 METTL16Q86W50 562 aaKnown RBP25.73■■□□□ 1.71
TRIM28-202ENST00000341753 PUS7LQ9H0K6 701 aaKnown RBP25.73■■□□□ 1.71
TRIM28-202ENST00000341753 UBE2Q2LH0YL09 131 aa25.73■■□□□ 1.71
TRIM28-202ENST00000341753 IL15P40933 162 aaPredicted RBP25.73■■□□□ 1.71
TRIM28-202ENST00000341753 STK11IPQ8N1F8 1099 aa25.73■■□□□ 1.71
TRIM28-202ENST00000341753 SMARCE1Q969G3 411 aa25.73■■□□□ 1.71
TRIM28-202ENST00000341753 CHMP4CQ96CF2 233 aa25.73■■□□□ 1.71
TRIM28-202ENST00000341753 DESI2Q9BSY9 194 aa25.73■■□□□ 1.71
TRIM28-202ENST00000341753 CASQ1P31415 396 aa25.72■■□□□ 1.71
TRIM28-202ENST00000341753 SCARF1Q14162 830 aa25.72■■□□□ 1.71
TRIM28-202ENST00000341753 ZSWIM4Q9H7M6 989 aa25.72■■□□□ 1.71
TRIM28-202ENST00000341753 OLFM4Q6UX06 510 aa25.72■■□□□ 1.71
TRIM28-202ENST00000341753 TMOD3Q9NYL9 352 aa25.72■■□□□ 1.71
TRIM28-202ENST00000341753 PCDHA5Q9Y5H7 936 aa25.72■■□□□ 1.71
TRIM28-202ENST00000341753 EYA2O00167 538 aa25.72■■□□□ 1.71
TRIM28-202ENST00000341753 ZSCAN12O43309 604 aa25.72■■□□□ 1.71
TRIM28-202ENST00000341753 BMP6P22004 513 aa25.72■■□□□ 1.71
TRIM28-202ENST00000341753 KARSQ15046 597 aaKnown RBP25.72■■□□□ 1.71
TRIM28-202ENST00000341753 CCDC158Q5M9N0 1113 aa25.72■■□□□ 1.71
TRIM28-202ENST00000341753 CC2D1AQ6P1N0 951 aaPredicted RBP25.72■■□□□ 1.71
TRIM28-202ENST00000341753 LAMB4A4D0S4 1761 aa25.71■■□□□ 1.71
TRIM28-202ENST00000341753 DHX8Q14562 1220 aaKnown RBP25.71■■□□□ 1.71
TRIM28-202ENST00000341753 NKX1-1Q15270 411 aaPredicted RBP25.71■■□□□ 1.71
TRIM28-202ENST00000341753 NCOA7Q8NI08 942 aa25.71■■□□□ 1.71
TRIM28-202ENST00000341753 BAG1Q99933 345 aaPredicted RBP25.71■■□□□ 1.71
TRIM28-202ENST00000341753 SRRTQ9BXP5 876 aaKnown RBP25.71■■□□□ 1.71
TRIM28-202ENST00000341753 SENP2Q9HC62 589 aa25.71■■□□□ 1.71
TRIM28-202ENST00000341753 HPSEQ9Y251 543 aa25.71■■□□□ 1.71
TRIM28-202ENST00000341753 PPP2R3AQ06190 1150 aa25.71■■□□□ 1.71
TRIM28-202ENST00000341753 KRT40Q6A162 431 aa25.71■■□□□ 1.71
TRIM28-202ENST00000341753 ZNF827Q17R98 1081 aa25.7■■□□□ 1.7
TRIM28-202ENST00000341753 TRMT44Q8IYL2 757 aaKnown RBP25.7■■□□□ 1.7
TRIM28-202ENST00000341753 CCDC191Q8NCU4 936 aa25.7■■□□□ 1.7
TRIM28-202ENST00000341753 CNNM3Q8NE01 707 aa25.7■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms