RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 LRP5O75197 1615 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 MINDY4BA8MYZ0 360 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 IFIT3O14879 490 aaKnown RBP12.07□□□□□ -0.48
LIMA1-201ENST00000341247 SDF4Q9BRK5 362 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 RAI14Q9P0K7 980 aa12.07□□□□□ -0.48
LIMA1-201ENST00000341247 NTSR2O95665 410 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 FBXO18Q8NFZ0 1043 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 ALG1Q9BT22 464 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 NRBP1Q9UHY1 535 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 MYH7P12883 1935 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 PTGS1P23219 599 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 RBM10P98175 930 aaKnown RBP12.06□□□□□ -0.48
LIMA1-201ENST00000341247 ISM2Q6H9L7 571 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 SYNE3Q6ZMZ3 975 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 ZSWIM5Q9P217 1185 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 RREB1Q92766 1687 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 GOLGA8AA7E2F4 631 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 BIN1O00499 593 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 APOA5Q6Q788 366 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 VPS37DQ86XT2 251 aa12.06□□□□□ -0.48
LIMA1-201ENST00000341247 COL5A3P25940 1745 aaPredicted RBP12.06□□□□□ -0.48
LIMA1-201ENST00000341247 SH2B2O14492 632 aaPredicted RBP12.05□□□□□ -0.48
LIMA1-201ENST00000341247 SLC4A8Q2Y0W8 1093 aa12.05□□□□□ -0.48
LIMA1-201ENST00000341247 NUP133Q8WUM0 1156 aa12.05□□□□□ -0.48
LIMA1-201ENST00000341247 PYCARDQ9ULZ3 195 aa12.05□□□□□ -0.48
LIMA1-201ENST00000341247 PATL2C9JE40 543 aaKnown RBP12.05□□□□□ -0.48
LIMA1-201ENST00000341247 ZBTB43O43298 467 aa12.05□□□□□ -0.48
LIMA1-201ENST00000341247 CYP7A1P22680 504 aa12.05□□□□□ -0.48
LIMA1-201ENST00000341247 SNW1Q13573 536 aaKnown RBP12.05□□□□□ -0.48
LIMA1-201ENST00000341247 SLC26A6Q9BXS9 759 aa12.05□□□□□ -0.48
LIMA1-201ENST00000341247 SRP68Q9UHB9 627 aaKnown RBP12.05□□□□□ -0.48
LIMA1-201ENST00000341247 GSG1L2A8MUP6 293 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 NDUFA8P51970 172 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 MYSM1Q5VVJ2 828 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 ADGRA1Q86SQ6 560 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 CHMP4CQ96CF2 233 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 ATP2B1P20020 1258 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 EVCP57679 992 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 PARP10Q53GL7 1025 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 NGLY1Q96IV0 654 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 ZNF512BQ96KM6 892 aaPredicted RBP12.04□□□□□ -0.48
LIMA1-201ENST00000341247 ARID3AQ99856 593 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 KCNF1Q9H3M0 494 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 CYP2D7A0A087X1C5 515 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 LRMPQ12912 555 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 NOLC1Q14978 699 aaKnown RBP eCLIP12.04□□□□□ -0.48
LIMA1-201ENST00000341247 MFSD6Q6ZSS7 791 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 CCDC186Q7Z3E2 898 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 BCL2L12Q9HB09 334 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 SLC12A7Q9Y666 1083 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 ABCC12Q96J65 1359 aa12.04□□□□□ -0.48
LIMA1-201ENST00000341247 CCDC69A6NI79 296 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 GOLGA6L19H0YKK7 550 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 NPHP1O15259 732 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 SPTLC2O15270 562 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 PRDM1O75626 825 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 FAM160A1Q05DH4 1040 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 KRT40Q6A162 431 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 TICAM2Q86XR7 235 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 LINC00301Q8NCQ3 95 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 MRPS27Q92552 414 aaKnown RBP12.03□□□□□ -0.48
LIMA1-201ENST00000341247 BECN2A8MW95 431 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 KLRK1P26718 216 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 IARSP41252 1262 aaKnown RBP12.03□□□□□ -0.48
LIMA1-201ENST00000341247 KIF23Q02241 960 aaPredicted RBP12.03□□□□□ -0.48
LIMA1-201ENST00000341247 ANKRD18AQ8IVF6 992 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 IGDCC4Q8TDY8 1250 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 CELF1Q92879 486 aaKnown RBP12.03□□□□□ -0.48
LIMA1-201ENST00000341247 CDCA7Q9BWT1 371 aaPredicted RBP12.03□□□□□ -0.48
LIMA1-201ENST00000341247 LY9Q9HBG7 655 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 ZMYM6O95789 1325 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 UQCRHLA0A096LP55 91 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 UQCRHP07919 91 aa12.03□□□□□ -0.48
LIMA1-201ENST00000341247 RANBP6O60518 1105 aaKnown RBP12.02□□□□□ -0.48
LIMA1-201ENST00000341247 GUCY1A2P33402 732 aa12.02□□□□□ -0.48
LIMA1-201ENST00000341247 DYNLL1P63167 89 aaKnown RBP12.02□□□□□ -0.48
LIMA1-201ENST00000341247 RTEL1Q9NZ71 1219 aa12.02□□□□□ -0.48
LIMA1-201ENST00000341247 TFCP2L1Q9NZI6 479 aa12.02□□□□□ -0.48
LIMA1-201ENST00000341247 ZNF652Q9Y2D9 606 aa12.02□□□□□ -0.48
LIMA1-201ENST00000341247 hCG_1642624A0A1W2PR95 340 aa12.02□□□□□ -0.49
LIMA1-201ENST00000341247 CHAF1AQ13111 956 aaPredicted RBP12.02□□□□□ -0.49
LIMA1-201ENST00000341247 SPECC1Q5M775 1068 aa12.02□□□□□ -0.49
LIMA1-201ENST00000341247 AKNAD1Q5T1N1 836 aa12.02□□□□□ -0.49
LIMA1-201ENST00000341247 TBC1D9BQ66K14 1250 aa12.02□□□□□ -0.49
LIMA1-201ENST00000341247 CPLX2Q6PUV4 134 aaKnown RBP12.02□□□□□ -0.49
LIMA1-201ENST00000341247 RBM43Q6ZSC3 357 aaKnown RBP12.02□□□□□ -0.49
LIMA1-201ENST00000341247 TSC1Q92574 1164 aa12.02□□□□□ -0.49
LIMA1-201ENST00000341247 CDC5LQ99459 802 aaKnown RBP12.02□□□□□ -0.49
LIMA1-201ENST00000341247 KCNJ14Q9UNX9 436 aa12.02□□□□□ -0.49
LIMA1-201ENST00000341247 EVX2Q03828 476 aa12.02□□□□□ -0.49
LIMA1-201ENST00000341247 ANO1Q5XXA6 986 aa12.02□□□□□ -0.49
LIMA1-201ENST00000341247 ENGASEQ8NFI3 743 aa12.02□□□□□ -0.49
LIMA1-201ENST00000341247 NACAP1Q9BZK3 213 aa12.02□□□□□ -0.49
LIMA1-201ENST00000341247 THRAP3Q9Y2W1 955 aaKnown RBP12.02□□□□□ -0.49
LIMA1-201ENST00000341247 COL1A1P02452 1464 aaPredicted RBP12.02□□□□□ -0.49
LIMA1-201ENST00000341247 BARGINQ6ZT62 677 aa12.01□□□□□ -0.49
LIMA1-201ENST00000341247 FBXL16Q8N461 479 aa12.01□□□□□ -0.49
LIMA1-201ENST00000341247 CLIC6Q96NY7 704 aa12.01□□□□□ -0.49
LIMA1-201ENST00000341247 BCL11BQ9C0K0 894 aaPredicted RBP12.01□□□□□ -0.49
LIMA1-201ENST00000341247 FAM13BQ9NYF5 915 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms