RNA–Protein interactions for RNA: ENST00000335725.8

TDP1-201, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 3,702 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-201ENST00000335725 F13A1P00488 732 aa9.72□□□□□ -0.85
TDP1-201ENST00000335725 U2AF1L5P0DN76 240 aaPredicted RBP9.72□□□□□ -0.85
TDP1-201ENST00000335725 TRIM21P19474 475 aaKnown RBP9.72□□□□□ -0.85
TDP1-201ENST00000335725 GNGT1P63211 74 aa9.72□□□□□ -0.85
TDP1-201ENST00000335725 U2AF1Q01081 240 aaKnown RBP eCLIP9.72□□□□□ -0.85
TDP1-201ENST00000335725 AATFQ9NY61 560 aaKnown RBP eCLIP9.72□□□□□ -0.85
TDP1-201ENST00000335725 NPHP3Q7Z494 1330 aa9.72□□□□□ -0.85
TDP1-201ENST00000335725 PENKP01210 267 aaPredicted RBP9.71□□□□□ -0.85
TDP1-201ENST00000335725 GNAI3P08754 354 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 ATP4AP20648 1035 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 KIF5BP33176 963 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 KRT72Q14CN4 511 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 TAF7Q15545 349 aaPredicted RBP9.71□□□□□ -0.85
TDP1-201ENST00000335725 PKN1Q16512 942 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 SOGA3Q5TF21 947 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 RBM43Q6ZSC3 357 aaKnown RBP9.71□□□□□ -0.85
TDP1-201ENST00000335725 CCDC121Q6ZUS5 278 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 TRIM11Q96F44 468 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.71□□□□□ -0.85
TDP1-201ENST00000335725 ZBTB40Q9NUA8 1239 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 MAPK8IP1Q9UQF2 711 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 EVC2Q86UK5 1308 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 LAMC3Q9Y6N6 1575 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 A6NHS1 94 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 PDE6BP35913 854 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 ZNF394Q53GI3 561 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 PABPN1Q86U42 306 aaKnown RBP eCLIP9.71□□□□□ -0.85
TDP1-201ENST00000335725 WDR66Q8TBY9 1149 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 PPP1R14BQ96C90 147 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 JAKMIP1Q96N16 626 aaKnown RBP9.71□□□□□ -0.85
TDP1-201ENST00000335725 DNAJC25Q9H1X3 360 aa9.71□□□□□ -0.85
TDP1-201ENST00000335725 LRRC10BA6NIK2 292 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 STXBP3O00186 592 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 STX6O43752 255 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 HMMRO75330 724 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 WDHD1O75717 1129 aaPredicted RBP9.71□□□□□ -0.86
TDP1-201ENST00000335725 TPPPO94811 219 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 MBD4O95243 580 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 CEP57L1Q8IYX8 460 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 ANKRD27Q96NW4 1050 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 TCHPQ9BT92 498 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 ATXN10Q9UBB4 475 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 TMCO1Q9UM00 188 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 ITM2BQ9Y287 266 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 SAMM50Q9Y512 469 aa9.71□□□□□ -0.86
TDP1-201ENST00000335725 TMEM232C9JQI7 657 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 ALDH3A1P30838 453 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 CTCFP49711 727 aaPredicted RBP9.7□□□□□ -0.86
TDP1-201ENST00000335725 MYO1EQ12965 1108 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 CACTIN-AS1Q8N1I8 211 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 IWS1Q96ST2 819 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 CORO1BQ9BR76 489 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 BCL2L13Q9BXK5 485 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 NOP53Q9NZM5 478 aaKnown RBP9.7□□□□□ -0.86
TDP1-201ENST00000335725 PCF11O94913 1555 aaKnown RBP9.7□□□□□ -0.86
TDP1-201ENST00000335725 TESPA1A2RU30 521 aaPredicted RBP9.7□□□□□ -0.86
TDP1-201ENST00000335725 TMEM221A6NGB7 291 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 LINGO3P0C6S8 592 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 CA8P35219 290 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 GNG11P61952 73 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 CADPSQ9ULU8 1353 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 TMCC1O94876 653 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 SYF2O95926 243 aaKnown RBP9.7□□□□□ -0.86
TDP1-201ENST00000335725 MXRA7P84157 204 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 CAMK4Q16566 473 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 SH2D4BQ5SQS7 431 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 OTUD6AQ7L8S5 288 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 SLF2Q8IX21 1173 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 CKAP2LQ8IYA6 745 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 TEKT4Q8WW24 435 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 SYTL4Q96C24 671 aaPredicted RBP9.7□□□□□ -0.86
TDP1-201ENST00000335725 OPTNQ96CV9 577 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 MOV10L1Q9BXT6 1211 aaKnown RBP9.7□□□□□ -0.86
TDP1-201ENST00000335725 CLSTN2Q9H4D0 955 aa9.7□□□□□ -0.86
TDP1-201ENST00000335725 BIN1O00499 593 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 TIMM44O43615 452 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 SH3BGRP55822 239 aaPredicted RBP9.69□□□□□ -0.86
TDP1-201ENST00000335725 FBLN2P98095 1184 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 FAM228AQ86W67 206 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 TRIML1Q8N9V2 468 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 SLC35B4Q969S0 331 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 RETREG1Q9H6L5 497 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 ANKZF1Q9H8Y5 726 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 SAPCD2Q86UD0 394 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 CCDC155Q8N6L0 562 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 MAIP1Q8WWC4 291 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 P3H4Q92791 437 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 GALNT8Q9NY28 637 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 CYP27B1O15528 508 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 NPTXRO95502 500 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 SSBP05455 408 aaKnown RBP eCLIP9.69□□□□□ -0.86
TDP1-201ENST00000335725 KRT85P78386 507 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 STIM1Q13586 685 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 STX1AQ16623 288 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 GJC2Q5T442 439 aaPredicted RBP9.69□□□□□ -0.86
TDP1-201ENST00000335725 ATF7IPQ6VMQ6 1270 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.69□□□□□ -0.862e-6■■□□□ 12.6
TDP1-201ENST00000335725 PCDH18Q9HCL0 1135 aa9.69□□□□□ -0.86
TDP1-201ENST00000335725 RGS12O14924 1447 aa9.68□□□□□ -0.86
TDP1-201ENST00000335725 GOLGA8KD6RF30 607 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms