RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 DHX32Q7L7V1 743 aaKnown RBP16.67■□□□□ 0.26
VRK3-201ENST00000316763 CHMP4CQ96CF2 233 aa16.67■□□□□ 0.26
VRK3-201ENST00000316763 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.67■□□□□ 0.262e-7■■■□□ 18.9
VRK3-201ENST00000316763 PODXL2Q9NZ53 605 aa16.67■□□□□ 0.26
VRK3-201ENST00000316763 BCS1LQ9Y276 419 aa16.67■□□□□ 0.26
VRK3-201ENST00000316763 LAMA4Q16363 1823 aa16.67■□□□□ 0.26
VRK3-201ENST00000316763 GPSM2P81274 684 aa16.66■□□□□ 0.26
VRK3-201ENST00000316763 TPRNQ4KMQ1 711 aa16.66■□□□□ 0.26
VRK3-201ENST00000316763 LLPHQ9BRT6 129 aaKnown RBP16.66■□□□□ 0.26
VRK3-201ENST00000316763 SEMA3EO15041 775 aa16.66■□□□□ 0.26
VRK3-201ENST00000316763 ZSCAN25Q6NSZ9 544 aa16.66■□□□□ 0.26
VRK3-201ENST00000316763 TMX4Q9H1E5 349 aaPredicted RBP16.66■□□□□ 0.26
VRK3-201ENST00000316763 KIF3AQ9Y496 699 aa16.66■□□□□ 0.26
VRK3-201ENST00000316763 PDS5AQ29RF7 1337 aaKnown RBP16.65■□□□□ 0.26
VRK3-201ENST00000316763 GOLGB1Q14789 3259 aaKnown RBP16.65■□□□□ 0.26
VRK3-201ENST00000316763 HIBADHP31937 336 aaKnown RBP16.65■□□□□ 0.26
VRK3-201ENST00000316763 ADD2P35612 726 aa16.65■□□□□ 0.26
VRK3-201ENST00000316763 FERMT3Q86UX7 667 aa16.65■□□□□ 0.26
VRK3-201ENST00000316763 TXNRD3Q86VQ6 643 aa16.65■□□□□ 0.26
VRK3-201ENST00000316763 VPS37DQ86XT2 251 aa16.65■□□□□ 0.26
VRK3-201ENST00000316763 APPBP2Q92624 585 aa16.65■□□□□ 0.26
VRK3-201ENST00000316763 OSBP2Q969R2 916 aa16.65■□□□□ 0.26
VRK3-201ENST00000316763 ARFGEF1Q9Y6D6 1849 aa16.65■□□□□ 0.26
VRK3-201ENST00000316763 MAST3O60307 1309 aa16.65■□□□□ 0.26
VRK3-201ENST00000316763 GOLGA6L4A6NEF3 574 aa16.64■□□□□ 0.26
VRK3-201ENST00000316763 DTNBO60941 627 aa16.64■□□□□ 0.26
VRK3-201ENST00000316763 HSPD1P10809 573 aaKnown RBP16.64■□□□□ 0.26
VRK3-201ENST00000316763 ATP2B4P23634 1241 aa16.64■□□□□ 0.26
VRK3-201ENST00000316763 UBE3CQ15386 1083 aa16.64■□□□□ 0.26
VRK3-201ENST00000316763 BRF1Q92994 677 aa16.64■□□□□ 0.26
VRK3-201ENST00000316763 DENND2AQ9ULE3 1009 aa16.64■□□□□ 0.26
VRK3-201ENST00000316763 COL1A1P02452 1464 aaPredicted RBP16.64■□□□□ 0.25
VRK3-201ENST00000316763 LTBP1Q14766 1721 aa16.64■□□□□ 0.25
VRK3-201ENST00000316763 H3BQV1 296 aa16.64■□□□□ 0.25
VRK3-201ENST00000316763 PFKFB2O60825 505 aa16.64■□□□□ 0.25
VRK3-201ENST00000316763 PTMAP06454 111 aaKnown RBP16.64■□□□□ 0.25
VRK3-201ENST00000316763 SLC9C2Q5TAH2 1124 aa16.64■□□□□ 0.25
VRK3-201ENST00000316763 IFFO2Q5TF58 517 aa16.64■□□□□ 0.25
VRK3-201ENST00000316763 CC2D2BQ6DHV5 1058 aa16.64■□□□□ 0.25
VRK3-201ENST00000316763 MPNDQ8N594 471 aa16.64■□□□□ 0.25
VRK3-201ENST00000316763 CTNNA3Q9UI47 895 aa16.64■□□□□ 0.25
VRK3-201ENST00000316763 TCRBV5S4A2TA0A5A2 114 aa16.63■□□□□ 0.25
VRK3-201ENST00000316763 M0R2C6 588 aa16.63■□□□□ 0.25
VRK3-201ENST00000316763 IDH1O75874 414 aaKnown RBP16.63■□□□□ 0.25
VRK3-201ENST00000316763 TTC6Q86TZ1 520 aa16.63■□□□□ 0.25
VRK3-201ENST00000316763 SPATA32Q96LK8 384 aa16.63■□□□□ 0.25
VRK3-201ENST00000316763 ZSCAN16Q9H4T2 348 aaPredicted RBP16.63■□□□□ 0.25
VRK3-201ENST00000316763 GGA1Q9UJY5 639 aa16.63■□□□□ 0.25
VRK3-201ENST00000316763 ZKSCAN5Q9Y2L8 839 aa16.63■□□□□ 0.25
VRK3-201ENST00000316763 PDE6AP16499 860 aa16.62■□□□□ 0.25
VRK3-201ENST00000316763 HMGN5P82970 282 aaKnown RBP16.62■□□□□ 0.25
VRK3-201ENST00000316763 MAP3K12Q12852 859 aa16.62■□□□□ 0.25
VRK3-201ENST00000316763 CCDC93Q567U6 631 aa16.62■□□□□ 0.25
VRK3-201ENST00000316763 DPP8Q6V1X1 898 aaPredicted RBP16.62■□□□□ 0.25
VRK3-201ENST00000316763 STOX1Q6ZVD7 989 aa16.62■□□□□ 0.25
VRK3-201ENST00000316763 POLLQ9UGP5 575 aa16.62■□□□□ 0.25
VRK3-201ENST00000316763 IQSEC3Q9UPP2 1182 aaPredicted RBP16.62■□□□□ 0.25
VRK3-201ENST00000316763 SNED1Q8TER0 1413 aa16.62■□□□□ 0.25
VRK3-201ENST00000316763 E7EWF7 191 aa16.62■□□□□ 0.25
VRK3-201ENST00000316763 ZNF500O60304 480 aaPredicted RBP16.62■□□□□ 0.25
VRK3-201ENST00000316763 UFL1O94874 794 aa16.62■□□□□ 0.25
VRK3-201ENST00000316763 EXOSC10Q01780 885 aaKnown RBP16.62■□□□□ 0.25
VRK3-201ENST00000316763 TBC1D16Q8TBP0 767 aa16.62■□□□□ 0.25
VRK3-201ENST00000316763 PUS7LQ9H0K6 701 aaKnown RBP16.62■□□□□ 0.25
VRK3-201ENST00000316763 DOCK2Q92608 1830 aa16.61■□□□□ 0.25
VRK3-201ENST00000316763 JAK2O60674 1132 aa16.61■□□□□ 0.25
VRK3-201ENST00000316763 CCDC192P0DO97 292 aa16.61■□□□□ 0.25
VRK3-201ENST00000316763 WASHC4Q2M389 1173 aa16.61■□□□□ 0.25
VRK3-201ENST00000316763 SOGA3Q5TF21 947 aa16.61■□□□□ 0.25
VRK3-201ENST00000316763 GIMAP6Q6P9H5 292 aa16.61■□□□□ 0.25
VRK3-201ENST00000316763 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.61■□□□□ 0.25
VRK3-201ENST00000316763 SMARCC2Q8TAQ2 1214 aa16.61■□□□□ 0.25
VRK3-201ENST00000316763 AGXT2Q9BYV1 514 aa16.61■□□□□ 0.25
VRK3-201ENST00000316763 FER1L6Q2WGJ9 1857 aa16.61■□□□□ 0.25
VRK3-201ENST00000316763 ZNF532Q9HCE3 1301 aa16.61■□□□□ 0.25
VRK3-201ENST00000316763 DUOX1Q9NRD9 1551 aa16.61■□□□□ 0.25
VRK3-201ENST00000316763 C6orf229H3BNL8 230 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 SCRN1Q12765 414 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 RTKN2Q8IZC4 609 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 TDRD7Q8NHU6 1098 aaKnown RBP16.6■□□□□ 0.25
VRK3-201ENST00000316763 GPR101Q96P66 508 aaPredicted RBP16.6■□□□□ 0.25
VRK3-201ENST00000316763 FUCA2Q9BTY2 467 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 LRRC2Q9BYS8 371 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 NUP62CLQ9H1M0 184 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 CFAP45Q9UL16 551 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 MYH7P12883 1935 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 OFD1O75665 1012 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 MAP3K11Q16584 847 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 GRIPAP1Q4V328 841 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 ZNF804AQ7Z570 1209 aa16.6■□□□□ 0.25
VRK3-201ENST00000316763 LEO1Q8WVC0 666 aaPredicted RBP16.6■□□□□ 0.25
VRK3-201ENST00000316763 ZNF274Q96GC6 653 aaPredicted RBP16.6■□□□□ 0.25
VRK3-201ENST00000316763 FOXP2O15409 715 aa16.59■□□□□ 0.25
VRK3-201ENST00000316763 YBX3P16989 372 aaKnown RBP eCLIP16.59■□□□□ 0.254e-7■■□□□ 11.9
VRK3-201ENST00000316763 APOBRQ0VD83 1088 aa16.59■□□□□ 0.25
VRK3-201ENST00000316763 RESTQ13127 1097 aa16.59■□□□□ 0.25
VRK3-201ENST00000316763 IMMTQ16891 758 aaKnown RBP16.59■□□□□ 0.25
VRK3-201ENST00000316763 NAA16Q6N069 864 aaPredicted RBP16.59■□□□□ 0.25
VRK3-201ENST00000316763 FAM173BQ6P4H8 233 aa16.59■□□□□ 0.25
VRK3-201ENST00000316763 MAGEB6Q8N7X4 407 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms