RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 DTHD1Q6ZMT9 781 aa15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 PNMA8AQ86V59 439 aaPredicted RBP15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 DDX21Q9NR30 783 aaKnown RBP eCLIP15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 TSKSQ9UJT2 592 aa15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 AKR1B15C9JRZ8 316 aaPredicted RBP15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 TEKT2Q9UIF3 430 aa15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 PPP1R42Q7Z4L9 355 aa15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 BANK1Q8NDB2 785 aa15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 PRAM1Q96QH2 718 aa15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 KIF21BO75037 1637 aa15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 RAPGEF1Q13905 1077 aa15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 NONOQ15233 471 aaKnown RBP eCLIP15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 PAWRQ96IZ0 340 aaKnown RBP15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 CALUO43852 315 aaPredicted RBP15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 KRT15P19012 456 aa15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 LRGUKQ96M69 825 aa15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 RIOK1Q9BRS2 568 aaKnown RBP15.51■□□□□ 0.07
CCDC88A-201ENST00000263630 RAB17Q9H0T7 212 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 NLRP7Q8WX94 980 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 NAPGQ99747 312 aaPredicted RBP15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 ANKRD20A4Q4UJ75 823 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 ANKRD20A8PQ5CZ79 823 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 ANKRD20A2Q5SQ80 823 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 ANKRD20A1Q5TYW2 823 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 FNBP4Q8N3X1 1017 aaPredicted RBP15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 ARHGAP42A6NI28 874 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 TEX13AQ9BXU3 409 aaPredicted RBP15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 TRIM75PA6NK02 468 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 CD2APQ9Y5K6 639 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 PTPRGP23470 1445 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 TRIM60Q495X7 471 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 BRDTQ58F21 947 aaPredicted RBP15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 CYP26C1Q6V0L0 522 aa15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 THEMISQ8N1K5 641 aaPredicted RBP15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 IPO11Q9UI26 975 aaKnown RBP15.5■□□□□ 0.07
CCDC88A-201ENST00000263630 TXNDC2Q86VQ3 553 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 SMAP1Q8IYB5 467 aaPredicted RBP15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 HAUS1Q96CS2 278 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 ABCC11Q96J66 1382 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 ESYT2A0FGR8 921 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 TBC1D8O95759 1140 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 TNFAIP3P21580 790 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 CLCN1P35523 988 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 TMTC4Q5T4D3 741 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 JADE1Q6IE81 842 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 ASIC3Q9UHC3 531 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 TPX2Q9ULW0 747 aaKnown RBP15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 EXOC7Q9UPT5 735 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 DAPK1P53355 1430 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 NUP58Q9BVL2 599 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 TTF2Q9UNY4 1162 aaKnown RBP15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 CARD10Q9BWT7 1032 aa15.49■□□□□ 0.07
CCDC88A-201ENST00000263630 RAD50Q92878 1312 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 UTP14CQ5TAP6 766 aaKnown RBP15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 ANGPTL3Q9Y5C1 460 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 BIRC3Q13489 604 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 PPP2R5DQ14738 602 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 ZC3H15Q8WU90 426 aaKnown RBP15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 NUB1Q9Y5A7 615 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 GSTA1P08263 222 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 GSTA2P09210 222 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 PAK2Q13177 524 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 CCDC186Q7Z3E2 898 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 C16orf71Q8IYS4 520 aaPredicted RBP15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 SCINQ9Y6U3 715 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 LRRD1A4D1F6 860 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 GDPD2Q9HCC8 539 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 KLHL14Q9P2G3 628 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 MAN1A1P33908 653 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 CNNM4Q6P4Q7 775 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 DAAM1Q9Y4D1 1078 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 LPXNO60711 386 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 RLBP1P12271 317 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 TMEM132EQ6IEE7 984 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 ECHDC1Q9NTX5 307 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 TRIM68Q6AZZ1 485 aa15.48■□□□□ 0.07
CCDC88A-201ENST00000263630 EVCP57679 992 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 MMEL1Q495T6 779 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 NXNQ6DKJ4 435 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 STRN3Q13033 797 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 ZKSCAN5Q9Y2L8 839 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 E9PMD0 336 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 GNAT2P19087 354 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 ERO1AQ96HE7 468 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 DKC1O60832 514 aaKnown RBP eCLIP15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 KARSQ15046 597 aaKnown RBP15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 STAG1Q8WVM7 1258 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 EVI5O60447 810 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 RBM26Q5T8P6 1007 aaKnown RBP15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 UBE3BQ7Z3V4 1068 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 CCDC8Q9H0W5 538 aaPredicted RBP15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 ASIC2Q16515 512 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 PPP2R5EQ16537 467 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 CCDC138Q96M89 665 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 HSP90AA4PQ58FG1 418 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 STK38LQ9Y2H1 464 aa15.47■□□□□ 0.07
CCDC88A-201ENST00000263630 PPFIA4O75335 1185 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 LMNB2Q03252 620 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 DHX58Q96C10 678 aa15.46■□□□□ 0.07
CCDC88A-201ENST00000263630 PLCG2P16885 1265 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms