RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 FAM221AA4D161 298 aa7.24□□□□□ -1.25
CCDC54-201ENST00000261058 COL8A1P27658 744 aa7.24□□□□□ -1.25
CCDC54-201ENST00000261058 NLRP12P59046 1061 aa7.24□□□□□ -1.25
CCDC54-201ENST00000261058 TRIM28Q13263 835 aaKnown RBP7.24□□□□□ -1.25
CCDC54-201ENST00000261058 IGF2-ASQ6U949 168 aa7.24□□□□□ -1.25
CCDC54-201ENST00000261058 RASGRP4Q8TDF6 673 aa7.24□□□□□ -1.25
CCDC54-201ENST00000261058 SCARF2Q96GP6 870 aaPredicted RBP7.24□□□□□ -1.25
CCDC54-201ENST00000261058 CORO1BQ9BR76 489 aa7.24□□□□□ -1.25
CCDC54-201ENST00000261058 CCSER2Q9H7U1 834 aa7.24□□□□□ -1.25
CCDC54-201ENST00000261058 PCDHB5Q9Y5E4 795 aa7.24□□□□□ -1.25
CCDC54-201ENST00000261058 MINDY4BA8MYZ0 360 aa7.23□□□□□ -1.25
CCDC54-201ENST00000261058 WISP1O95388 367 aa7.23□□□□□ -1.25
CCDC54-201ENST00000261058 IGHA1P01876 353 aa7.23□□□□□ -1.25
CCDC54-201ENST00000261058 SPATA31C1P0DKV0 1188 aa7.23□□□□□ -1.25
CCDC54-201ENST00000261058 SELPP16109 830 aa7.23□□□□□ -1.25
CCDC54-201ENST00000261058 MPRIPQ6WCQ1 1025 aa7.23□□□□□ -1.25
CCDC54-201ENST00000261058 SLC43A3Q8NBI5 491 aa7.23□□□□□ -1.25
CCDC54-201ENST00000261058 ZNF296Q8WUU4 475 aaPredicted RBP7.23□□□□□ -1.25
CCDC54-201ENST00000261058 NT5C1AQ9BXI3 368 aa7.23□□□□□ -1.25
CCDC54-201ENST00000261058 LRRC3Q9BY71 257 aa7.23□□□□□ -1.25
CCDC54-201ENST00000261058 CCDC86Q9H6F5 360 aaKnown RBP7.23□□□□□ -1.25
CCDC54-201ENST00000261058 MEGF11A6BM72 1044 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 FAM229AH3BQW9 127 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 ZNF862O60290 1169 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 PTPN11Q06124 597 aaPredicted RBP7.22□□□□□ -1.25
CCDC54-201ENST00000261058 KIF4BQ2VIQ3 1234 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 FAM196AQ6ZSG2 479 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 KIAA1211Q6ZU35 1233 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 ALYREFQ86V81 257 aaKnown RBP7.22□□□□□ -1.25
CCDC54-201ENST00000261058 KIAA0825Q8IV33 1275 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 TMEM130Q8N3G9 435 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 UBASH3BQ8TF42 649 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 GATAD2BQ8WXI9 593 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 EAF1Q96JC9 268 aaPredicted RBP7.22□□□□□ -1.25
CCDC54-201ENST00000261058 SPON2Q9BUD6 331 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 TMPRSS13Q9BYE2 586 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 MIR1-1HGQ9H1L0 117 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 SUPT16HQ9Y5B9 1047 aaKnown RBP7.22□□□□□ -1.25
CCDC54-201ENST00000261058 PCDHGC5Q9Y5F6 944 aa7.22□□□□□ -1.25
CCDC54-201ENST00000261058 CILPO75339 1184 aa7.21□□□□□ -1.25
CCDC54-201ENST00000261058 TNNI2P48788 182 aa7.21□□□□□ -1.25
CCDC54-201ENST00000261058 PAK2Q13177 524 aa7.21□□□□□ -1.25
CCDC54-201ENST00000261058 NAALADL2Q58DX5 795 aa7.21□□□□□ -1.25
CCDC54-201ENST00000261058 PRRT3Q5FWE3 981 aa7.21□□□□□ -1.25
CCDC54-201ENST00000261058 MAP1SQ66K74 1059 aaPredicted RBP7.21□□□□□ -1.25
CCDC54-201ENST00000261058 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.21□□□□□ -1.25
CCDC54-201ENST00000261058 GOLM1Q8NBJ4 401 aa7.21□□□□□ -1.25
CCDC54-201ENST00000261058 USP26Q9BXU7 913 aa7.21□□□□□ -1.25
CCDC54-201ENST00000261058 MRPL18Q9H0U6 180 aaKnown RBP7.21□□□□□ -1.25
CCDC54-201ENST00000261058 CBX8Q9HC52 389 aa7.21□□□□□ -1.25
CCDC54-201ENST00000261058 ROBO2Q9HCK4 1378 aa7.21□□□□□ -1.26
CCDC54-201ENST00000261058 F13A1P00488 732 aa7.2□□□□□ -1.26
CCDC54-201ENST00000261058 FAM160A1Q05DH4 1040 aa7.2□□□□□ -1.26
CCDC54-201ENST00000261058 SEPT6Q14141 434 aa7.2□□□□□ -1.26
CCDC54-201ENST00000261058 HP1BP3Q5SSJ5 553 aaPredicted RBP7.2□□□□□ -1.26
CCDC54-201ENST00000261058 BNC2Q6ZN30 1099 aaPredicted RBP7.2□□□□□ -1.26
CCDC54-201ENST00000261058 GPBAR1Q8TDU6 330 aa7.2□□□□□ -1.26
CCDC54-201ENST00000261058 LENG1Q96BZ8 264 aaPredicted RBP7.2□□□□□ -1.26
CCDC54-201ENST00000261058 GMLQ99445 158 aa7.2□□□□□ -1.26
CCDC54-201ENST00000261058 SUGCTQ9HAC7 445 aa7.2□□□□□ -1.26
CCDC54-201ENST00000261058 CRKP46108 304 aa7.19□□□□□ -1.26
CCDC54-201ENST00000261058 DUOXA2Q1HG44 320 aa7.19□□□□□ -1.26
CCDC54-201ENST00000261058 EXOSC6Q5RKV6 272 aaKnown RBP7.19□□□□□ -1.26
CCDC54-201ENST00000261058 SNAP47Q5SQN1 464 aa7.19□□□□□ -1.26
CCDC54-201ENST00000261058 Q6ZS46 218 aa7.19□□□□□ -1.26
CCDC54-201ENST00000261058 KCNB2Q92953 911 aa7.19□□□□□ -1.26
CCDC54-201ENST00000261058 WDR89Q96FK6 387 aaPredicted RBP7.19□□□□□ -1.26
CCDC54-201ENST00000261058 WDR18Q9BV38 432 aa7.19□□□□□ -1.26
CCDC54-201ENST00000261058 ZC3H12CQ9C0D7 883 aaKnown RBP7.19□□□□□ -1.26
CCDC54-201ENST00000261058 MPP2Q14168 576 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 GRIK4Q16099 956 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 SHISA2Q6UWI4 295 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 SLITRK4Q8IW52 837 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 GPRASP2Q96D09 838 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 SPATA32Q96LK8 384 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 INPP5FQ9Y2H2 1132 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 F8W735 103 aaPredicted RBP7.18□□□□□ -1.26
CCDC54-201ENST00000261058 GFRA2O00451 464 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 AOC2O75106 756 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 TIAF1O95411 115 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 RPL6Q02878 288 aaKnown RBP7.18□□□□□ -1.26
CCDC54-201ENST00000261058 RING1Q06587 406 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 ZC3H12AQ5D1E8 599 aaKnown RBP7.18□□□□□ -1.26
CCDC54-201ENST00000261058 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.18□□□□□ -1.26
CCDC54-201ENST00000261058 SMG8Q8ND04 991 aaKnown RBP7.18□□□□□ -1.26
CCDC54-201ENST00000261058 RUSC1Q9BVN2 902 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 RNF208Q9H0X6 261 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 CAPN10Q9HC96 672 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 UBP1Q9NZI7 540 aa7.18□□□□□ -1.26
CCDC54-201ENST00000261058 LIG1P18858 919 aa7.17□□□□□ -1.26
CCDC54-201ENST00000261058 LMNB1P20700 586 aa7.17□□□□□ -1.26
CCDC54-201ENST00000261058 HNRNPUQ00839 825 aaKnown RBP eCLIP7.17□□□□□ -1.26
CCDC54-201ENST00000261058 PDE3AQ14432 1141 aa7.17□□□□□ -1.26
CCDC54-201ENST00000261058 GPAT2Q6NUI2 795 aa7.17□□□□□ -1.26
CCDC54-201ENST00000261058 ACAD11Q709F0 780 aa7.17□□□□□ -1.26
CCDC54-201ENST00000261058 FBXO27Q8NI29 283 aa7.17□□□□□ -1.26
CCDC54-201ENST00000261058 GSX1Q9H4S2 264 aaPredicted RBP7.17□□□□□ -1.26
CCDC54-201ENST00000261058 ATF4P18848 351 aaPredicted RBP7.16□□□□□ -1.26
CCDC54-201ENST00000261058 SOX9P48436 509 aa7.16□□□□□ -1.26
CCDC54-201ENST00000261058 GNL2Q13823 731 aaKnown RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms