RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 LINC00052Q96N35 136 aa12.75□□□□□ -0.37
SHKBP1-227ENST00000602011 NIPSNAP3BQ9BS92 247 aa12.75□□□□□ -0.37
SHKBP1-227ENST00000602011 PBDC1Q9BVG4 233 aa12.75□□□□□ -0.37
SHKBP1-227ENST00000602011 BATF3Q9NR55 127 aa12.75□□□□□ -0.37
SHKBP1-227ENST00000602011 PKD1P98161 4303 aa12.74□□□□□ -0.37
SHKBP1-227ENST00000602011 DUXBA0A1W2PPF3 345 aa12.74□□□□□ -0.37
SHKBP1-227ENST00000602011 PAX9P55771 341 aa12.74□□□□□ -0.37
SHKBP1-227ENST00000602011 PSG9Q00887 426 aa12.74□□□□□ -0.37
SHKBP1-227ENST00000602011 GAMTQ14353 236 aa12.74□□□□□ -0.37
SHKBP1-227ENST00000602011 DIRAS2Q96HU8 199 aa12.74□□□□□ -0.37
SHKBP1-227ENST00000602011 DKK2Q9UBU2 259 aa12.74□□□□□ -0.37
SHKBP1-227ENST00000602011 SLC45A2Q9UMX9 530 aa12.74□□□□□ -0.37
SHKBP1-227ENST00000602011 MUC4Q99102 2169 aa12.74□□□□□ -0.37
SHKBP1-227ENST00000602011 ANKRD20A5PA0PJZ0 165 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 CTDSP2O14595 271 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 HBE1P02100 147 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 RPP30P78346 268 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 IL18Q14116 193 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 ZNF79Q15937 498 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 GGNBP1Q5YKI7 109 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 FAAP20Q6NZ36 180 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 ZNF767PQ75MW2 155 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 OR8I2Q8N0Y5 310 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 TRGV9Q99603 122 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 RBKSQ9H477 322 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 RPRMQ9NS64 109 aa12.73□□□□□ -0.37
SHKBP1-227ENST00000602011 FAM3BP58499 235 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-227ENST00000602011 UBE2DNLQ8IWF7 75 aa12.72□□□□□ -0.37
SHKBP1-227ENST00000602011 OR4B1Q8NGF8 309 aa12.72□□□□□ -0.37
SHKBP1-227ENST00000602011 PPP1R14BQ96C90 147 aa12.72□□□□□ -0.37
SHKBP1-227ENST00000602011 M0R2N4 97 aa12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 SOCS3O14543 225 aa12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 MED6O75586 246 aa12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 SLC25A6P12236 298 aa12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 EMP1P54849 157 aa12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 B2MP61769 119 aa12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 LYZL2Q7Z4W2 148 aa12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 OR4D5Q8NGN0 318 aa12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 OR1S1Q8NH92 325 aa12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 CIB3Q96Q77 187 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 SCRT1Q9BWW7 348 aa12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 WDR12Q9GZL7 423 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 SLIRPQ9GZT3 109 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-227ENST00000602011 IGKV1D-37A0A075B6S9 117 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 IGHV3OR16-12A0A075B7B8 117 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 A6NHS1 94 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 RTL8CO15255 209 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 IGKV3-20P01619 116 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 GALR1P47211 349 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 LYZP61626 148 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 ZNF90Q03938 601 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 RRN3P1Q2M238 152 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 GDF5OSQ5U4N7 250 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 FAM222AQ5U5X8 452 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 ZNF709Q8N972 641 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 MCFD2Q8NI22 146 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 GPR82Q96P67 336 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 C7orf50Q9BRJ6 194 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 KRTAP4-5Q9BYR2 181 aa12.7□□□□□ -0.38
SHKBP1-227ENST00000602011 A0A0J9YX75 114 aa12.69□□□□□ -0.38
SHKBP1-227ENST00000602011 FAUP35544 74 aaKnown RBP12.69□□□□□ -0.38
SHKBP1-227ENST00000602011 THAP8Q8NA92 274 aa12.69□□□□□ -0.38
SHKBP1-227ENST00000602011 MCUBQ9NWR8 336 aa12.69□□□□□ -0.38
SHKBP1-227ENST00000602011 PITX3O75364 302 aa12.68□□□□□ -0.38
SHKBP1-227ENST00000602011 TMEM128Q5BJH2 165 aa12.68□□□□□ -0.38
SHKBP1-227ENST00000602011 FAM78BQ5VT40 261 aa12.68□□□□□ -0.38
SHKBP1-227ENST00000602011 Q6ZR54 194 aa12.68□□□□□ -0.38
SHKBP1-227ENST00000602011 C15orf53Q8NAA6 179 aa12.68□□□□□ -0.38
SHKBP1-227ENST00000602011 C16orf92Q96LL3 132 aa12.68□□□□□ -0.38
SHKBP1-227ENST00000602011 MAGT1Q9H0U3 335 aa12.68□□□□□ -0.38
SHKBP1-227ENST00000602011 DOK5Q9P104 306 aa12.68□□□□□ -0.38
SHKBP1-227ENST00000602011 LOC102723971A0A1B0GUV8 181 aa12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 A8MTW9 85 aa12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 DUSP14O95147 198 aaKnown RBP12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 S100A5P33763 92 aa12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 FXYD7P58549 80 aa12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 AP3S2P59780 193 aa12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 LRTM2Q8N967 370 aa12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 OR1B1Q8NGR6 318 aa12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 DEDD2Q8WXF8 326 aa12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 IGF2BP2-AS1Q96M15 143 aa12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 SLC35B3Q9H1N7 401 aa12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 TMED3Q9Y3Q3 217 aa12.67□□□□□ -0.38
SHKBP1-227ENST00000602011 DAD1P61803 113 aa12.66□□□□□ -0.38
SHKBP1-227ENST00000602011 GSG1LQ6UXU4 331 aa12.66□□□□□ -0.38
SHKBP1-227ENST00000602011 S100A7AQ86SG5 101 aa12.66□□□□□ -0.38
SHKBP1-227ENST00000602011 C1orf158Q8N1D5 194 aa12.66□□□□□ -0.38
SHKBP1-227ENST00000602011 BPIFCQ8NFQ6 507 aa12.66□□□□□ -0.38
SHKBP1-227ENST00000602011 TMEM208Q9BTX3 173 aa12.66□□□□□ -0.38
SHKBP1-227ENST00000602011 YTHDF2Q9Y5A9 579 aaKnown RBP12.66□□□□□ -0.38
SHKBP1-227ENST00000602011 FABP12A6NFH5 140 aa12.65□□□□□ -0.38
SHKBP1-227ENST00000602011 ZNF98A6NK75 572 aa12.65□□□□□ -0.38
SHKBP1-227ENST00000602011 LYRM9A8MSI8 78 aa12.65□□□□□ -0.38
SHKBP1-227ENST00000602011 OR2F1Q13607 317 aa12.65□□□□□ -0.38
SHKBP1-227ENST00000602011 SOSTQ9BQB4 213 aa12.65□□□□□ -0.38
SHKBP1-227ENST00000602011 SLC25A21Q9BQT8 299 aaPredicted RBP12.65□□□□□ -0.38
SHKBP1-227ENST00000602011 RNF24Q9Y225 148 aa12.65□□□□□ -0.38
SHKBP1-227ENST00000602011 HSPG2P98160 4391 aa12.64□□□□□ -0.39
SHKBP1-227ENST00000602011 TSPOP30536 169 aa12.64□□□□□ -0.39
SHKBP1-227ENST00000602011 TNFSF8P32971 234 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms