RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 MAP1LC3B2A6NCE7 125 aa11.89□□□□□ -0.51
UPF1-206ENST00000598471 LINC00305Q7Z4B0 112 aa11.89□□□□□ -0.51
UPF1-206ENST00000598471 C11orf44Q8N8P7 122 aa11.89□□□□□ -0.51
UPF1-206ENST00000598471 SFT2D1Q8WV19 159 aa11.89□□□□□ -0.51
UPF1-206ENST00000598471 PCNPQ8WW12 178 aaKnown RBP11.89□□□□□ -0.51
UPF1-206ENST00000598471 MBD3L1Q8WWY6 194 aa11.89□□□□□ -0.51
UPF1-206ENST00000598471 TMEM37Q8WXS4 190 aa11.89□□□□□ -0.51
UPF1-206ENST00000598471 NARS2Q96I59 477 aaKnown RBP11.89□□□□□ -0.51
UPF1-206ENST00000598471 METTL26Q96S19 204 aa11.89□□□□□ -0.51
UPF1-206ENST00000598471 CITED2Q99967 270 aaPredicted RBP11.89□□□□□ -0.51
UPF1-206ENST00000598471 MAP1LC3BQ9GZQ8 125 aa11.89□□□□□ -0.51
UPF1-206ENST00000598471 ZFAND3Q9H8U3 227 aa11.89□□□□□ -0.51
UPF1-206ENST00000598471 TECRQ9NZ01 308 aaKnown RBP11.89□□□□□ -0.51
UPF1-206ENST00000598471 MRPL27Q9P0M9 148 aaKnown RBP11.89□□□□□ -0.51
UPF1-206ENST00000598471 IGHV4OR15-8A0A075B7B6 117 aa11.88□□□□□ -0.51
UPF1-206ENST00000598471 A0A087WW49 117 aa11.88□□□□□ -0.51
UPF1-206ENST00000598471 LINC01619G3V211 115 aa11.88□□□□□ -0.51
UPF1-206ENST00000598471 C8orf88P0DMB2 117 aa11.88□□□□□ -0.51
UPF1-206ENST00000598471 USF2Q15853 346 aaPredicted RBP11.88□□□□□ -0.51
UPF1-206ENST00000598471 ZNF726P1Q15940 193 aa11.88□□□□□ -0.51
UPF1-206ENST00000598471 KHDC3LQ587J8 217 aa11.88□□□□□ -0.51
UPF1-206ENST00000598471 LCN15Q6UWW0 184 aa11.88□□□□□ -0.51
UPF1-206ENST00000598471 PATE2Q6UY27 113 aa11.88□□□□□ -0.51
UPF1-206ENST00000598471 GPHB5Q86YW7 130 aa11.88□□□□□ -0.51
UPF1-206ENST00000598471 TMEM190Q8WZ59 177 aa11.88□□□□□ -0.51
UPF1-206ENST00000598471 C20orf24Q9BUV8 137 aa11.88□□□□□ -0.51
UPF1-206ENST00000598471 SEPSECSQ9HD40 501 aaKnown RBP11.88□□□□□ -0.51
UPF1-206ENST00000598471 TRAV1-1A0A0B4J248 108 aa11.87□□□□□ -0.51
UPF1-206ENST00000598471 MIR17HGQ75NE6 70 aa11.87□□□□□ -0.51
UPF1-206ENST00000598471 STXBP6Q8NFX7 210 aa11.87□□□□□ -0.51
UPF1-206ENST00000598471 OR1N2Q8NGR9 330 aa11.87□□□□□ -0.51
UPF1-206ENST00000598471 UHRF2Q96PU4 802 aa11.87□□□□□ -0.51
UPF1-206ENST00000598471 SLC25A39Q9BZJ4 359 aaPredicted RBP11.87□□□□□ -0.51
UPF1-206ENST00000598471 HRH4Q9H3N8 390 aa11.87□□□□□ -0.51
UPF1-206ENST00000598471 UFC1Q9Y3C8 167 aa11.87□□□□□ -0.51
UPF1-206ENST00000598471 A0A1W2PRX2 142 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 ZNF320A2RRD8 509 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 H3BRN7 92 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 CXorf1O96002 111 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 STAG3L2P0CL84 134 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 STAG3L3P0CL85 134 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 NPPCP23582 126 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 HOXD3P31249 432 aaPredicted RBP11.86□□□□□ -0.51
UPF1-206ENST00000598471 AWAT1Q58HT5 328 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 SPATA31B1PQ5VZV4 182 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 PQLC2Q6ZP29 291 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 C18orf65Q6ZTR6 163 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 C8orf86Q6ZUL3 223 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 SSX7Q7RTT5 188 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 NDUFA11Q86Y39 141 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 OR11H1Q8NG94 326 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 SHANK2-AS3Q9BTD1 123 aa11.86□□□□□ -0.51
UPF1-206ENST00000598471 HMGB3O15347 200 aaKnown RBP11.85□□□□□ -0.51
UPF1-206ENST00000598471 OR7C2O60412 319 aa11.85□□□□□ -0.51
UPF1-206ENST00000598471 BMI1P35226 326 aa11.85□□□□□ -0.51
UPF1-206ENST00000598471 DEFB136Q30KP8 78 aa11.85□□□□□ -0.51
UPF1-206ENST00000598471 REC114Q7Z4M0 266 aa11.85□□□□□ -0.51
UPF1-206ENST00000598471 C1QL4Q86Z23 238 aa11.85□□□□□ -0.51
UPF1-206ENST00000598471 IQCF2Q8IXL9 164 aa11.85□□□□□ -0.51
UPF1-206ENST00000598471 LYPD6BQ8NI32 183 aa11.85□□□□□ -0.51
UPF1-206ENST00000598471 TMEM158Q8WZ71 300 aa11.85□□□□□ -0.51
UPF1-206ENST00000598471 ZNF414Q96IQ9 312 aa11.85□□□□□ -0.51
UPF1-206ENST00000598471 SCRT1Q9BWW7 348 aa11.85□□□□□ -0.51
UPF1-206ENST00000598471 DAZ1Q9NQZ3 744 aaKnown RBP11.85□□□□□ -0.51
UPF1-206ENST00000598471 FBN1P35555 2871 aaKnown RBP11.85□□□□□ -0.51
UPF1-206ENST00000598471 IGHV3OR16-8A0A075B7F1 116 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 A0A1B0GV50 99 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 A0A1W2PS18 150 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 ZNF98A6NK75 572 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 K7EMT4 169 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 LGALS9O00182 355 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 IFNA1P01562 189 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 ARL14EPLP0DKL9 152 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 PPT1P50897 306 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 FGF8P55075 233 aaPredicted RBP11.84□□□□□ -0.51
UPF1-206ENST00000598471 NDUFA5Q16718 116 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 UNQ9165/PRO28630Q6UXU0 137 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 IL34Q6ZMJ4 242 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 GRAMD2BQ96HH9 432 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 TMEM231Q9H6L2 316 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 TMEM167BQ9NRX6 74 aa11.84□□□□□ -0.51
UPF1-206ENST00000598471 EIF3GO75821 320 aaKnown RBP eCLIP11.83□□□□□ -0.52
UPF1-206ENST00000598471 CRYBB3P26998 211 aa11.83□□□□□ -0.52
UPF1-206ENST00000598471 PSMB3P49720 205 aa11.83□□□□□ -0.52
UPF1-206ENST00000598471 SYNJ2BPP57105 145 aa11.83□□□□□ -0.52
UPF1-206ENST00000598471 MORN5Q5VZ52 161 aa11.83□□□□□ -0.52
UPF1-206ENST00000598471 BPIFA4PQ86YQ2 179 aa11.83□□□□□ -0.52
UPF1-206ENST00000598471 GPR82Q96P67 336 aa11.83□□□□□ -0.52
UPF1-206ENST00000598471 PAXXQ9BUH6 204 aa11.83□□□□□ -0.52
UPF1-206ENST00000598471 SLC25A2Q9BXI2 301 aa11.83□□□□□ -0.52
UPF1-206ENST00000598471 MED9Q9NWA0 146 aa11.83□□□□□ -0.52
UPF1-206ENST00000598471 TRAV5A0A0B4J249 113 aa11.82□□□□□ -0.52
UPF1-206ENST00000598471 LINC00862A6NCI5 91 aa11.82□□□□□ -0.52
UPF1-206ENST00000598471 A8MWP6 167 aa11.82□□□□□ -0.52
UPF1-206ENST00000598471 CCL24O00175 119 aa11.82□□□□□ -0.52
UPF1-206ENST00000598471 ZNF207O43670 478 aaKnown RBP11.82□□□□□ -0.52
UPF1-206ENST00000598471 RPL7P18124 248 aaKnown RBP11.82□□□□□ -0.52
UPF1-206ENST00000598471 GCHFRP30047 84 aa11.82□□□□□ -0.52
UPF1-206ENST00000598471 KRTAP10-3P60369 221 aa11.82□□□□□ -0.52
UPF1-206ENST00000598471 UBE2L3P68036 154 aaKnown RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms