RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 BMI1P35226 326 aa12.17□□□□□ -0.46
CUX1-214ENST00000550008 HINT1P49773 126 aaPredicted RBP12.17□□□□□ -0.46
CUX1-214ENST00000550008 CX3CL1P78423 397 aa12.17□□□□□ -0.46
CUX1-214ENST00000550008 IGFL4Q6B9Z1 124 aa12.17□□□□□ -0.46
CUX1-214ENST00000550008 KLK15Q9H2R5 256 aa12.17□□□□□ -0.46
CUX1-214ENST00000550008 PPIFP30405 207 aaKnown RBP12.17□□□□□ -0.46
CUX1-214ENST00000550008 GATA4P43694 442 aa12.17□□□□□ -0.46
CUX1-214ENST00000550008 HBBP68871 147 aa12.17□□□□□ -0.46
CUX1-214ENST00000550008 IGFL2Q6UWQ7 119 aa12.17□□□□□ -0.46
CUX1-214ENST00000550008 ZNF841Q6ZN19 808 aa12.17□□□□□ -0.46
CUX1-214ENST00000550008 EEF1AKMT3Q96AZ1 226 aa12.17□□□□□ -0.46
CUX1-214ENST00000550008 TBL2Q9Y4P3 447 aaKnown RBP12.17□□□□□ -0.46
CUX1-214ENST00000550008 BTF3P20290 206 aaKnown RBP12.17□□□□□ -0.46
CUX1-214ENST00000550008 RPL15P61313 204 aaKnown RBP12.17□□□□□ -0.46
CUX1-214ENST00000550008 UNQ6494/PRO21346Q6UXR6 183 aa12.17□□□□□ -0.46
CUX1-214ENST00000550008 HIST1H1AQ02539 215 aaPredicted RBP12.16□□□□□ -0.46
CUX1-214ENST00000550008 HAX1O00165 279 aa12.16□□□□□ -0.46
CUX1-214ENST00000550008 NBL1P41271 181 aa12.16□□□□□ -0.46
CUX1-214ENST00000550008 OR10J6PQ8NGY7 276 aa12.16□□□□□ -0.46
CUX1-214ENST00000550008 TRBV24-1A0A075B6N3 115 aa12.16□□□□□ -0.46
CUX1-214ENST00000550008 CD99P14209 185 aa12.16□□□□□ -0.46
CUX1-214ENST00000550008 SPATA45Q537H7 98 aa12.16□□□□□ -0.46
CUX1-214ENST00000550008 TPTE2P1Q5T6R2 138 aa12.16□□□□□ -0.46
CUX1-214ENST00000550008 A0A1B0GW64 132 aa12.16□□□□□ -0.46
CUX1-214ENST00000550008 VDAC2P45880 294 aaPredicted RBP12.16□□□□□ -0.46
CUX1-214ENST00000550008 TMEM155Q4W5P6 130 aa12.16□□□□□ -0.46
CUX1-214ENST00000550008 GLMPQ8WWB7 406 aa12.16□□□□□ -0.46
CUX1-214ENST00000550008 KCNS1Q96KK3 526 aa12.16□□□□□ -0.46
CUX1-214ENST00000550008 TMEM170AQ8WVE7 144 aa12.15□□□□□ -0.46
CUX1-214ENST00000550008 HIST1H2BLQ99880 126 aa12.15□□□□□ -0.46
CUX1-214ENST00000550008 NDUFAF3Q9BU61 184 aa12.15□□□□□ -0.46
CUX1-214ENST00000550008 TMEM14BQ9NUH8 114 aa12.15□□□□□ -0.46
CUX1-214ENST00000550008 M0R3E3 92 aa12.15□□□□□ -0.46
CUX1-214ENST00000550008 TMEM256Q8N2U0 113 aa12.15□□□□□ -0.46
CUX1-214ENST00000550008 A0A1B0GUS0 222 aa12.15□□□□□ -0.46
CUX1-214ENST00000550008 DUX5Q96PT3 197 aa12.15□□□□□ -0.46
CUX1-214ENST00000550008 RPP21Q9H633 154 aaKnown RBP12.15□□□□□ -0.46
CUX1-214ENST00000550008 CFHR2P36980 270 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 PMCHL2Q9BQD1 86 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 ST6GALNAC3Q8NDV1 305 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 SRD5A1P18405 259 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 NMUP48645 174 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 PSG9Q00887 426 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 WT1-ASQ06250 92 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 RBPMS2Q6ZRY4 209 aaKnown RBP12.14□□□□□ -0.47
CUX1-214ENST00000550008 CIARTQ8N365 385 aaPredicted RBP12.14□□□□□ -0.47
CUX1-214ENST00000550008 DYNLRB2Q8TF09 96 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 ST6GALNAC6Q969X2 333 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 CTSZQ9UBR2 303 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 GPX1P07203 203 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 C15orf32Q32M92 178 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 TNFRSF14Q92956 283 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 C18orf15Q96N68 181 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 HSPB8Q9UJY1 196 aa12.14□□□□□ -0.47
CUX1-214ENST00000550008 IGHV3OR16-12A0A075B7B8 117 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 M0R381 172 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 TMEM136Q6ZRR5 245 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 HIST3H2BBQ8N257 126 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 MAPK1IP1LQ8NDC0 245 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 WFDC12Q8WWY7 111 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 C14orf144Q96I85 54 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 SORL1Q92673 2214 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 A0A1B0GUT8 65 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 EFNA4P52798 201 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 CTAG1AP78358 180 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 C5orf64Q2M2E5 130 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 C22orf34Q6ZV56 151 aa12.13□□□□□ -0.47
CUX1-214ENST00000550008 IFITM10A6NMD0 228 aa12.12□□□□□ -0.47
CUX1-214ENST00000550008 ZNF114Q8NC26 417 aa12.12□□□□□ -0.47
CUX1-214ENST00000550008 NUDT10Q8NFP7 164 aa12.12□□□□□ -0.47
CUX1-214ENST00000550008 NUDT11Q96G61 164 aa12.12□□□□□ -0.47
CUX1-214ENST00000550008 SLC25A39Q9BZJ4 359 aaPredicted RBP12.12□□□□□ -0.47
CUX1-214ENST00000550008 F11RQ9Y624 299 aaKnown RBP12.12□□□□□ -0.47
CUX1-214ENST00000550008 AMBPP02760 352 aa12.12□□□□□ -0.47
CUX1-214ENST00000550008 NUP210LQ5VU65 1888 aa12.12□□□□□ -0.47
CUX1-214ENST00000550008 A0A1W2PS18 150 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 SNAI2O43623 268 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 FAM106AQ4KMX7 169 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 FAM74A4Q5TZK3 123 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 CENPVQ7Z7K6 275 aaPredicted RBP12.11□□□□□ -0.47
CUX1-214ENST00000550008 C8orf46Q8TAG6 207 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 OSTCQ9NRP0 149 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 PHLDA3Q9Y5J5 127 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 NPIPB5A8MRT5 1133 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 PYY3Q5JQD4 70 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 C11orf44Q8N8P7 122 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 Q8TCH9 128 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 AP5S1Q9NUS5 200 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 PSG8Q9UQ74 426 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 IGKV2-40A0A087WW87 121 aaPredicted RBP12.11□□□□□ -0.47
CUX1-214ENST00000550008 IGKV2D-40P01614 121 aaPredicted RBP12.11□□□□□ -0.47
CUX1-214ENST00000550008 ARHGAP32A7KAX9 2087 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 IZUMO1RA6ND01 250 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 FBLL1A6NHQ2 334 aaKnown RBP12.11□□□□□ -0.47
CUX1-214ENST00000550008 CEACAM4O75871 244 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 FOLR2P14207 255 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 UTF1Q5T230 341 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 OR5AN1Q8NGI8 311 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 Q8TAT8 98 aa12.11□□□□□ -0.47
CUX1-214ENST00000550008 C5orf30Q96GV9 206 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms