RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 IGHV1-24A0A0C4DH33 117 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 hADV38S2A0JD32 116 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 NXPH3O95157 252 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 UQCRFS1P47985 274 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 CKS1BP61024 79 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 LGALS9BQ3B8N2 356 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 UTF1Q5T230 341 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 LGALS9CQ6DKI2 356 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 Q6P435 159 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 STHQ8IWL8 128 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 TEX45Q8NA69 505 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 MRPL16Q9NX20 251 aaKnown RBP4.27□□□□□ -1.73
USP28-213ENST00000544967 MPC1Q9Y5U8 109 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 ACACAQ13085 2346 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.27□□□□□ -1.73
USP28-213ENST00000544967 TMEM213A2RRL7 107 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 RRHO14718 337 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 TNFSF12O43508 249 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 KIR2DS2P43631 304 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 VDAC2P45880 294 aaPredicted RBP4.27□□□□□ -1.73
USP28-213ENST00000544967 TEPPQ6URK8 271 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 TTC9CQ8N5M4 171 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 OR10X1Q8NGY0 326 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 PSMG3-AS1Q96PY0 264 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 OR2H1Q9GZK4 316 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 IDI2-AS1Q9NZ38 188 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 TRAPPC2LQ9UL33 140 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 SPCS1Q9Y6A9 102 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 J3QKU1 62 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 ZG16O60844 167 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 GATA2P23769 480 aaPredicted RBP4.27□□□□□ -1.73
USP28-213ENST00000544967 DUTP33316 252 aaKnown RBP4.27□□□□□ -1.73
USP28-213ENST00000544967 HBBP68871 147 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 ATOH7Q8N100 152 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 AKAP9Q99996 3911 aa4.27□□□□□ -1.73
USP28-213ENST00000544967 TRAV24A0A0B4J272 114 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 RPL32P62910 135 aaKnown RBP4.26□□□□□ -1.73
USP28-213ENST00000544967 TAL2Q16559 108 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 C3AR1Q16581 482 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 ADAMTSL5Q6ZMM2 481 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 H2BFWTQ7Z2G1 175 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 TPRX1Q8N7U7 411 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 ZNF418Q8TF45 676 aaPredicted RBP4.26□□□□□ -1.73
USP28-213ENST00000544967 LRRC29Q8WV35 223 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 IGFBPL1Q8WX77 278 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 SRXN1Q9BYN0 137 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 C7orf69Q9H7B7 122 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 A0A0J9YW62 118 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 TRBV6-1A0A0K0K1D8 114 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 LINC01619G3V211 115 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 GNG7O60262 68 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 PRB1P04280 392 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 TCL1AP56279 114 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 KIR3DS1Q14943 382 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 GABRA6Q16445 453 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 DMRTC1Q5HYR2 192 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 NUP35Q8NFH5 326 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 OR2T6Q8NHC8 308 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 ADTRPQ96IZ2 230 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 GPR82Q96P67 336 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 CNTRLQ7Z7A1 2325 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 MED12LQ86YW9 2145 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 FRMD6-AS1P0C7T7 363 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 LOXP28300 417 aaPredicted RBP4.26□□□□□ -1.73
USP28-213ENST00000544967 ZNF841Q6ZN19 808 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 VGLL1Q99990 258 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 SPANXB1Q9NS25 103 aaPredicted RBP4.26□□□□□ -1.73
USP28-213ENST00000544967 IL36RNQ9UBH0 155 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 JPT1Q9UK76 154 aa4.26□□□□□ -1.73
USP28-213ENST00000544967 TANC2Q9HCD6 1990 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 A0A0G2JNJ9 132 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 A1L4Q6 167 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 CD3EP07766 207 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 FOXA3P55318 350 aaPredicted RBP4.25□□□□□ -1.73
USP28-213ENST00000544967 EDDM3BP56851 147 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 KIAA1644Q3SXP7 199 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 C6orf226Q5I0X4 101 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 GFRALQ6UXV0 394 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 PRSS22Q9GZN4 317 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 Q9UFV3 132 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 DUSP13Q9UII6 198 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 hDV102S1A0JD36 115 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 J3QT63 122 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 GNLYP22749 145 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 CSN1S1P47710 185 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 MFAP2P55001 183 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 GNG3P63215 75 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 ZNF146Q15072 292 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 IZUMO4Q1ZYL8 232 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 GDF5OSQ5U4N7 250 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 CCDC144NLQ6NUI1 221 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 C20orf204Q6ZNR8 217 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 WFDC8Q8IUA0 241 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 STPG3Q8N7X2 389 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 C9orf106Q8NAJ2 232 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 OR10D3Q8NH80 312 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 GTSF1Q8WW33 167 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 OR1A1Q9P1Q5 309 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 KLF12Q9Y4X4 402 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 TLN1Q9Y490 2541 aaKnown RBP4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 84.8 ms