RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 STAG3L4Q8TBR4 150 aa0.28□□□□□ -2.36
VPS13A-213ENST00000539950 PRRT1Q99946 306 aa0.28□□□□□ -2.36
VPS13A-213ENST00000539950 PRADC1Q9BSG0 188 aa0.28□□□□□ -2.36
VPS13A-213ENST00000539950 C9orf16Q9BUW7 83 aa0.28□□□□□ -2.36
VPS13A-213ENST00000539950 RTL8AQ9BWD3 113 aa0.28□□□□□ -2.36
VPS13A-213ENST00000539950 RASL12Q9NYN1 266 aa0.28□□□□□ -2.36
VPS13A-213ENST00000539950 OPTCQ9UBM4 332 aa0.28□□□□□ -2.36
VPS13A-213ENST00000539950 KLK9Q9UKQ9 250 aa0.28□□□□□ -2.36
VPS13A-213ENST00000539950 PRNDQ9UKY0 176 aa0.28□□□□□ -2.36
VPS13A-213ENST00000539950 MIA2Q96PC5 1412 aa0.28□□□□□ -2.37
VPS13A-213ENST00000539950 USP24Q9UPU5 2620 aa0.28□□□□□ -2.37
VPS13A-213ENST00000539950 ALPK2Q86TB3 2170 aa0.28□□□□□ -2.37
VPS13A-213ENST00000539950 ECM29Q5VYK3 1845 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.27□□□□□ -2.37
VPS13A-213ENST00000539950 TRBV6-8A0A0A6YYG3 113 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 AIPO00170 330 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 CCL16O15467 120 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 NUPR1O60356 82 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 IGLV1-51P01701 117 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 MGST1P10620 155 aaKnown RBP0.27□□□□□ -2.37
VPS13A-213ENST00000539950 HLA-EP13747 358 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 SRP14P37108 136 aaKnown RBP0.27□□□□□ -2.37
VPS13A-213ENST00000539950 SERPINB9P50453 376 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 NCALDP61601 193 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 UBE2BP63146 152 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 POU6F1Q14863 301 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 TAF1AQ15573 450 aaPredicted RBP0.27□□□□□ -2.37
VPS13A-213ENST00000539950 MPV17LQ2QL34 196 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 SCGB2B2Q4G0G5 96 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 RNASE10Q5GAN6 216 aaKnown RBP0.27□□□□□ -2.37
VPS13A-213ENST00000539950 GDF5OSQ5U4N7 250 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 PDZD9Q8IXQ8 264 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 EXOC3-AS1Q8N2X6 119 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 LINC00301Q8NCQ3 95 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 SLC30A7Q8NEW0 376 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 OR10K1Q8NGX5 313 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 OBSCN-AS1Q96MR7 158 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 GPER1Q99527 375 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 PAIP2Q9BPZ3 127 aaKnown RBP0.27□□□□□ -2.37
VPS13A-213ENST00000539950 GINS3Q9BRX5 216 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 CCDC94Q9BW85 323 aaPredicted RBP0.27□□□□□ -2.37
VPS13A-213ENST00000539950 BOLA2Q9H3K6 86 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 ENY2Q9NPA8 101 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 LYRM2Q9NU23 88 aaPredicted RBP0.27□□□□□ -2.37
VPS13A-213ENST00000539950 UTP11Q9Y3A2 253 aaKnown RBP0.27□□□□□ -2.37
VPS13A-213ENST00000539950 FAM32AQ9Y421 112 aaKnown RBP0.27□□□□□ -2.37
VPS13A-213ENST00000539950 ROCK1Q13464 1354 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 UHRF1BP1Q6BDS2 1440 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 ARHGEF11O15085 1522 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 FRMPD1Q5SYB0 1578 aa0.27□□□□□ -2.37
VPS13A-213ENST00000539950 ANAPC1Q9H1A4 1944 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 HEATR5AQ86XA9 2040 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 MED12LQ86YW9 2145 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 TRBV6-4A0A1B0GX49 114 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 DUXBA0A1W2PPF3 345 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 C1orf196B1AJZ1 125 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 B4DSR2 109 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 CLDN25C9JDP6 229 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 TMEM256-PLSCR3K7ERE1 68 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 HMGB3O15347 200 aaKnown RBP0.26□□□□□ -2.37
VPS13A-213ENST00000539950 NDUFB3O43676 98 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 TIMM17BO60830 172 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 PIAS1O75925 651 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 ATG12O94817 140 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 GADD45GO95257 159 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 IFNA1P01562 189 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 ZNF93P35789 620 aaPredicted RBP0.26□□□□□ -2.37
VPS13A-213ENST00000539950 DYNLT3P51808 116 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 RHOBP62745 196 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 BCL2L15Q5TBC7 163 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 TMED4Q7Z7H5 227 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 TMEM254Q8TBM7 123 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 PLEKHB2Q96CS7 222 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 LINC00052Q96N35 136 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 TP53RKQ96S44 253 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 GPX7Q96SL4 187 aaPredicted RBP0.26□□□□□ -2.37
VPS13A-213ENST00000539950 SLC25A21Q9BQT8 299 aaPredicted RBP0.26□□□□□ -2.37
VPS13A-213ENST00000539950 ACER3Q9NUN7 267 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 STOML2Q9UJZ1 356 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 ZFP30Q9Y2G7 519 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 ASB4Q9Y574 426 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 CD109Q6YHK3 1445 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 YTHDC2Q9H6S0 1430 aaKnown RBP0.26□□□□□ -2.37
VPS13A-213ENST00000539950 CAMSAP2Q08AD1 1489 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 ADGBQ8N7X0 1667 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 UBR2Q8IWV8 1755 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 LAMA4Q16363 1823 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 PLXND1Q9Y4D7 1925 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 MCM3APO60318 1980 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 DOCK3Q8IZD9 2030 aa0.26□□□□□ -2.37
VPS13A-213ENST00000539950 EXPH5Q8NEV8 1989 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 TAF1LQ8IZX4 1826 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 PEAK1Q9H792 1746 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 CECR2Q9BXF3 1484 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 CEP164Q9UPV0 1460 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 TRAV27A0A087WT01 109 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 TRBV6-7A0A0A0MS04 114 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 TRAV3A0A0B4J244 114 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 IGHV1-58A0A0C4DH39 117 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 TCRBV4S1A1TA0A5B7 111 aa0.25□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms