RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 WDR83OSQ9Y284 106 aa8.23□□□□□ -1.09
COL4A6-208ENST00000538570 PKIGQ9Y2B9 76 aa8.23□□□□□ -1.09
COL4A6-208ENST00000538570 PIKFYVEQ9Y2I7 2098 aa8.23□□□□□ -1.09
COL4A6-208ENST00000538570 CYTL1Q9NRR1 136 aa8.23□□□□□ -1.09
COL4A6-208ENST00000538570 TIMP3P35625 211 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 CD24P25063 80 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 C20orf144Q9BQM9 153 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 UNC13CQ8NB66 2214 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 CSRP2Q16527 193 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 IMMP1LQ96LU5 166 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 PRADC1Q9BSG0 188 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 VSIRQ9H7M9 311 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 JPT2Q9H910 190 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 VWC2LB2RUY7 222 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 CDK2AP2O75956 126 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 BRWD3Q6RI45 1802 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 NPIPB5A8MRT5 1133 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 LCNL1Q6ZST4 164 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 PLEKHB2Q96CS7 222 aa8.22□□□□□ -1.09
COL4A6-208ENST00000538570 IGKV1-9A0A0C4DH69 117 aa8.21□□□□□ -1.09
COL4A6-208ENST00000538570 FAM166AQ6J272 317 aa8.21□□□□□ -1.09
COL4A6-208ENST00000538570 SLC25A48Q6ZT89 311 aaKnown RBP8.21□□□□□ -1.09
COL4A6-208ENST00000538570 TRAV13-1A0A0B4J241 112 aa8.21□□□□□ -1.09
COL4A6-208ENST00000538570 TIMM23O14925 209 aa8.21□□□□□ -1.09
COL4A6-208ENST00000538570 THBDP07204 575 aa8.21□□□□□ -1.09
COL4A6-208ENST00000538570 ADCYAP1P18509 176 aa8.21□□□□□ -1.09
COL4A6-208ENST00000538570 NPC2P61916 151 aa8.21□□□□□ -1.09
COL4A6-208ENST00000538570 ETDBQ3ZM63 59 aa8.21□□□□□ -1.09
COL4A6-208ENST00000538570 XIRP1Q702N8 1843 aaKnown RBP8.21□□□□□ -1.09
COL4A6-208ENST00000538570 ATAD5Q96QE3 1844 aa8.21□□□□□ -1.09
COL4A6-208ENST00000538570 IGKV2-40A0A087WW87 121 aaPredicted RBP8.21□□□□□ -1.1
COL4A6-208ENST00000538570 TRAV8-3A0A0A6YYJ7 113 aa8.21□□□□□ -1.1
COL4A6-208ENST00000538570 IGKV2D-40P01614 121 aaPredicted RBP8.21□□□□□ -1.1
COL4A6-208ENST00000538570 A0A0A6YYD4 124 aa8.21□□□□□ -1.1
COL4A6-208ENST00000538570 CCL25O15444 150 aa8.21□□□□□ -1.1
COL4A6-208ENST00000538570 TFF1P04155 84 aa8.21□□□□□ -1.1
COL4A6-208ENST00000538570 WNT2P09544 360 aa8.21□□□□□ -1.1
COL4A6-208ENST00000538570 SRD5A1P18405 259 aa8.21□□□□□ -1.1
COL4A6-208ENST00000538570 FNDC10F2Z333 226 aa8.21□□□□□ -1.1
COL4A6-208ENST00000538570 SRSF7Q16629 238 aaKnown RBP eCLIP8.21□□□□□ -1.1
COL4A6-208ENST00000538570 MTCL1Q9Y4B5 1905 aaKnown RBP8.21□□□□□ -1.1
COL4A6-208ENST00000538570 D6R8Y8 96 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 SYS1-DBNDD2H3BUS1 97 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 TREML4Q6UXN2 200 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 PTPRFP10586 1907 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 U3KQE9 123 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 HEATR5BQ9P2D3 2071 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 CMC4P56277 68 aaPredicted RBP8.2□□□□□ -1.1
COL4A6-208ENST00000538570 MRPL14Q6P1L8 145 aaKnown RBP8.2□□□□□ -1.1
COL4A6-208ENST00000538570 RCHY1Q96PM5 261 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 LAMTOR3Q9UHA4 124 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 PAX4O43316 350 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 C3orf36Q3SXR2 165 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 KLF17Q5JT82 389 aaPredicted RBP8.2□□□□□ -1.1
COL4A6-208ENST00000538570 IGHV1-18A0A0C4DH31 117 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 RASL10AQ92737 203 aa8.2□□□□□ -1.1
COL4A6-208ENST00000538570 RBMY1FQ15415 496 aaKnown RBP8.19□□□□□ -1.1
COL4A6-208ENST00000538570 TDRD6O60522 2096 aaKnown RBP8.19□□□□□ -1.1
COL4A6-208ENST00000538570 TRAV41A0A0B4J266 112 aa8.19□□□□□ -1.1
COL4A6-208ENST00000538570 FAM90A2PQ658T7 463 aa8.19□□□□□ -1.1
COL4A6-208ENST00000538570 DTX1Q86Y01 620 aa8.19□□□□□ -1.1
COL4A6-208ENST00000538570 PAQR4Q8N4S7 273 aaPredicted RBP8.19□□□□□ -1.1
COL4A6-208ENST00000538570 A0A0U1RQV1 116 aa8.19□□□□□ -1.1
COL4A6-208ENST00000538570 PMS2P5A8MQ11 134 aa8.19□□□□□ -1.1
COL4A6-208ENST00000538570 TEX43Q6ZNM6 134 aa8.19□□□□□ -1.1
COL4A6-208ENST00000538570 OVOL2Q9BRP0 275 aa8.19□□□□□ -1.1
COL4A6-208ENST00000538570 RP1P56715 2156 aa8.19□□□□□ -1.1
COL4A6-208ENST00000538570 SLC25A39Q9BZJ4 359 aaPredicted RBP8.19□□□□□ -1.1
COL4A6-208ENST00000538570 C22orf46C9J442 243 aa8.19□□□□□ -1.1
COL4A6-208ENST00000538570 LYPD6BQ8NI32 183 aa8.19□□□□□ -1.1
COL4A6-208ENST00000538570 COL11A1P12107 1806 aaPredicted RBP8.19□□□□□ -1.1
COL4A6-208ENST00000538570 SCN2AQ99250 2005 aa8.19□□□□□ -1.1
COL4A6-208ENST00000538570 A0A087WX48 190 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 ZNF876PQ49A33 203 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 LYZL1Q6UWQ5 148 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 LINC01551Q86U37 167 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 CHAC1Q9BUX1 264 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 DOCK3Q8IZD9 2030 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 IGLV3-32A0A0A0MS00 114 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 J3QRE1 110 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 MST1P26927 711 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 NSUN5P1Q3KNT7 163 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 RPRMLQ8N4K4 120 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 NABP1Q96AH0 204 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 IGKV1D-8A0A087WSZ0 117 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 A0A1W2PPM0 123 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 PRR31Q5SQ13 230 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 SPATA31B1PQ5VZV4 182 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 SSC4DQ8WTU2 575 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 SCN10AQ9Y5Y9 1956 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 IGLV3-12A0A075B6K2 115 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 TRAV1-1A0A0B4J248 108 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 IGHV1-46P01743 117 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 EXOC3-AS1Q8N2X6 119 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 MRPL27Q9P0M9 148 aaKnown RBP8.18□□□□□ -1.1
COL4A6-208ENST00000538570 METRNQ9UJH8 293 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 ASXL3Q9C0F0 2248 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.18□□□□□ -1.1
COL4A6-208ENST00000538570 LYNX1G3V0Z9 82 aa8.18□□□□□ -1.1
COL4A6-208ENST00000538570 LYNX1P0DP58 116 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms