RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 TMEM144Q7Z5S9 345 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 Q8NAQ8 132 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 OR11H2Q8NH07 326 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 SLC25A32Q9H2D1 315 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 PSENENQ9NZ42 101 aa7.73□□□□□ -1.17
CD44-227ENST00000528086 STRAPQ9Y3F4 350 aaKnown RBP7.73□□□□□ -1.17
CD44-227ENST00000528086 CENPXA8MT69 81 aa7.72□□□□□ -1.17
CD44-227ENST00000528086 SNRPGP15A8MWD9 76 aa7.72□□□□□ -1.17
CD44-227ENST00000528086 ASAH1Q13510 395 aa7.72□□□□□ -1.17
CD44-227ENST00000528086 PMS2P11Q13670 270 aa7.72□□□□□ -1.17
CD44-227ENST00000528086 PATE2Q6UY27 113 aa7.72□□□□□ -1.17
CD44-227ENST00000528086 ZNF431Q8TF32 576 aaPredicted RBP7.72□□□□□ -1.17
CD44-227ENST00000528086 GATAD1Q8WUU5 269 aa7.72□□□□□ -1.17
CD44-227ENST00000528086 RARRES2Q99969 163 aa7.72□□□□□ -1.17
CD44-227ENST00000528086 SEPSECSQ9HD40 501 aaKnown RBP7.72□□□□□ -1.17
CD44-227ENST00000528086 CLEC5AQ9NY25 188 aa7.72□□□□□ -1.17
CD44-227ENST00000528086 FRAS1Q86XX4 4008 aa7.72□□□□□ -1.17
CD44-227ENST00000528086 TRAV8-2A0A0B4J237 113 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 ZNF98A6NK75 572 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 ZNF705EA8MWA4 302 aaPredicted RBP7.71□□□□□ -1.18
CD44-227ENST00000528086 F6UB75 175 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 K7EPK0 472 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 MRPS12O15235 138 aaKnown RBP7.71□□□□□ -1.18
CD44-227ENST00000528086 SCGB2A1O75556 95 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 IFNA21P01568 189 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 H2AFB2P0C5Z0 115 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 AP2S1P53680 142 aaPredicted RBP7.71□□□□□ -1.18
CD44-227ENST00000528086 PLP1P60201 277 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 RRAS2P62070 204 aaPredicted RBP7.71□□□□□ -1.18
CD44-227ENST00000528086 C1orf194Q5T5A4 169 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 CYP2G1PQ6ZSU1 146 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 STHQ8IWL8 128 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 ZNF709Q8N972 641 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 NARS2Q96I59 477 aaKnown RBP7.71□□□□□ -1.18
CD44-227ENST00000528086 SCRT1Q9BWW7 348 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 GSKIPQ9P0R6 139 aa7.71□□□□□ -1.18
CD44-227ENST00000528086 ELOA3CA0A087WX78 387 aaPredicted RBP7.7□□□□□ -1.18
CD44-227ENST00000528086 A8MTW9 85 aa7.7□□□□□ -1.18
CD44-227ENST00000528086 H3BRN7 92 aa7.7□□□□□ -1.18
CD44-227ENST00000528086 TSC22D2O75157 780 aa7.7□□□□□ -1.18
CD44-227ENST00000528086 UPK1BO75841 260 aa7.7□□□□□ -1.18
CD44-227ENST00000528086 SCGB1D2O95969 90 aa7.7□□□□□ -1.18
CD44-227ENST00000528086 HLA-DRB4P13762 266 aa7.7□□□□□ -1.18
CD44-227ENST00000528086 TAS2R30P59541 319 aa7.7□□□□□ -1.18
CD44-227ENST00000528086 NANOS2P60321 138 aaKnown RBP7.7□□□□□ -1.18
CD44-227ENST00000528086 DLK1P80370 383 aa7.7□□□□□ -1.18
CD44-227ENST00000528086 CEMP1Q6PRD7 247 aaPredicted RBP7.7□□□□□ -1.18
CD44-227ENST00000528086 C12orf45Q8N5I9 185 aaPredicted RBP7.7□□□□□ -1.18
CD44-227ENST00000528086 C11orf68Q9H3H3 251 aaKnown RBP7.7□□□□□ -1.18
CD44-227ENST00000528086 HLA-DRB4X5D2U9 266 aa7.7□□□□□ -1.18
CD44-227ENST00000528086 IGHV4-28A0A0C4DH34 117 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 FAM24AA6NFZ4 105 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 IL5P05113 134 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 LINC00869P0C866 280 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 PRB4P10163 310 aaPredicted RBP7.69□□□□□ -1.18
CD44-227ENST00000528086 SPP1P10451 314 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 ORM2P19652 201 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 RPP30P78346 268 aaKnown RBP7.69□□□□□ -1.18
CD44-227ENST00000528086 AKR1C1Q04828 323 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 SLC38A11Q08AI6 406 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 MORN5Q5VZ52 161 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 IGFL4Q6B9Z1 124 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 UHRF2Q96PU4 802 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 MGST2Q99735 147 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 SAV1Q9H4B6 383 aaPredicted RBP7.69□□□□□ -1.18
CD44-227ENST00000528086 PTTG2Q9NZH5 202 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 DOK5Q9P104 306 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 XCL2Q9UBD3 114 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 SLC45A2Q9UMX9 530 aa7.69□□□□□ -1.18
CD44-227ENST00000528086 FAM240BA0A1B0GVZ2 78 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 IGSF23A1L1A6 192 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 FNDC10F2Z333 226 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 HLA-DMBP28068 263 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 PSMB3P49720 205 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 FXYD7P58549 80 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 RAB32Q13637 225 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 MORN3Q6PF18 240 aaPredicted RBP7.68□□□□□ -1.18
CD44-227ENST00000528086 AMTNQ6UX39 209 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 NRARPQ7Z6K4 114 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 OR8I2Q8N0Y5 310 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 BPIFCQ8NFQ6 507 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 OR1B1Q8NGR6 318 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 S100ZQ8WXG8 99 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 LINC00476Q8WZB0 136 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 C2orf50Q96LR7 162 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 SHANK2-AS3Q9BTD1 123 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 RSG1Q9BU20 258 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 SLC25A39Q9BZJ4 359 aaPredicted RBP7.68□□□□□ -1.18
CD44-227ENST00000528086 SLC35B3Q9H1N7 401 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 CELA1Q9UNI1 258 aa7.68□□□□□ -1.18
CD44-227ENST00000528086 SMCO3A2RU48 225 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 CXorf65A6NEN9 183 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 H0YIZ8 118 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 ISLRO14498 428 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 DEDDO75618 318 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 CST7O76096 145 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 SIX6O95475 246 aa7.67□□□□□ -1.18
CD44-227ENST00000528086 CFDP00746 253 aaPredicted RBP7.67□□□□□ -1.18
CD44-227ENST00000528086 IGKV3-20P01619 116 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 133.1 ms