RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 TTTY13Q9BZ97 58 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 PLA2G12AQ9BZM1 189 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 CST9LQ9H4G1 147 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 SMDT1Q9H4I9 107 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 BANF2Q9H503 90 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 OTORQ9NRC9 128 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 OSTCQ9NRP0 149 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 NHP2Q9NX24 153 aaKnown RBP0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 METTL1Q9UBP6 276 aaKnown RBP0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 MARCOQ9UEW3 520 aaPredicted RBP0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 TP73-AS1Q9UF72 201 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 NAT8Q9UHE5 227 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 EPDR1Q9UM22 224 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 TNFSF18Q9UNG2 199 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 BAIAP2Q9UQB8 552 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZFP30Q9Y2G7 519 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF835Q9Y2P0 537 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 SOX21Q9Y651 276 aaPredicted RBP0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 ICOSQ9Y6W8 199 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 LRRK1Q38SD2 2015 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 DENND4CQ5VZ89 1909 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNFX1Q9P2E3 1918 aaKnown RBP0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 MYH2Q9UKX2 1941 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 ECM29Q5VYK3 1845 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 KIAA1671Q9BY89 1806 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 BCORL1Q5H9F3 1711 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 RIMBP3CA6NJZ7 1639 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 RIMBP3BA6NNM3 1639 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 RIMBP3Q9UFD9 1639 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 RGS12O14924 1447 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 NSD3Q9BZ95 1437 aa0.38□□□□□ -2.35
RNU4-54P-201ENST00000516428 C2orf16Q68DN1 1984 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 CHD5Q8TDI0 1954 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 OTOFQ9HC10 1997 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 RALGAPA2Q2PPJ7 1873 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 NUP210LQ5VU65 1888 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 NUP210Q8TEM1 1887 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF106Q9H2Y7 1883 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 COL18A1P39060 1754 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 AKAP12Q02952 1782 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 QRICH2Q9H0J4 1663 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FRMPD1Q5SYB0 1578 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 MED14O60244 1454 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 COL1A1P02452 1464 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 CFTRP13569 1480 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ABCC10Q5T3U5 1492 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 CCDC18Q5T9S5 1454 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 RPRD2Q5VT52 1461 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FYCO1Q9BQS8 1478 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 CECR2Q9BXF3 1484 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 KTN1Q86UP2 1357 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF646O15015 1829 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 SIPA1L1O43166 1804 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 NUP98P52948 1817 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FOCADQ5VW36 1801 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 BRWD3Q6RI45 1802 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGLV3-12A0A075B6K2 115 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRBV20-1A0A075B6N2 111 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV2D-24A0A075B6R9 120 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1D-37A0A075B6S9 117 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAV7A0A075B6U4 112 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1OR2-108A0A075B7D4 117 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAV30A0A087WSZ9 112 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAV27A0A087WT01 109 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRAV16A0A0A6YYK6 109 aaPredicted RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRGV5A0A0B4J1U4 118 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV3-15A0A0B4J1V0 119 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV3-73A0A0B4J1V6 119 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A0B4J2C4 111 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A0D9SG52 128 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A0G2JMM0 328 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A0J9YW62 118 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRBV10-2A0A0K0K1G8 114 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FAM236AA0A1B0GUQ0 79 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FAM236BA0A1B0GV22 79 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 LOC107986453A0A1B0GWG9 222 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 A0A1W2PPB8 328 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TMEM218A2RU14 115 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 A8MUU9 505 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 ZNF727A8MUV8 499 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 KIR3DP1A8MWS1 328 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 FNDC10F2Z333 226 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 C17orf112F2Z3M2 114 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 H3BMG7 143 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 H3BPC8 53 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 PANO1I0J062 215 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 M0R143 59 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 RER1O15258 196 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 LYRM1O43325 122 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 PSCAO43653 123 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 CPSF4O95639 269 aaKnown RBP0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGLV3-19P01714 112 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV1-69P01742 117 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGHV3-53P01767 116 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 HBDP02042 147 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 MT-ND4LP03901 98 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 MT-ND6P03923 174 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TRGV3P03979 118 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 IGKV1-16P04430 117 aa0.37□□□□□ -2.35
RNU4-54P-201ENST00000516428 TCRAP04437 139 aa0.37□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms