RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 RPL15P61313 204 aaKnown RBP13.53□□□□□ -0.24
PCDHA1-203ENST00000504120 KLRD1Q13241 179 aa13.53□□□□□ -0.24
PCDHA1-203ENST00000504120 GFI1BQ5VTD9 330 aa13.53□□□□□ -0.24
PCDHA1-203ENST00000504120 NLRC5Q86WI3 1866 aa13.53□□□□□ -0.24
PCDHA1-203ENST00000504120 TRBV7-1A0A0A6YYK4 115 aa13.52□□□□□ -0.24
PCDHA1-203ENST00000504120 FREM3P0C091 2139 aa13.52□□□□□ -0.24
PCDHA1-203ENST00000504120 NTF4P34130 210 aa13.52□□□□□ -0.24
PCDHA1-203ENST00000504120 PCP4P48539 62 aa13.52□□□□□ -0.24
PCDHA1-203ENST00000504120 CD28P10747 220 aa13.52□□□□□ -0.24
PCDHA1-203ENST00000504120 MS4A6AQ9H2W1 248 aa13.52□□□□□ -0.25
PCDHA1-203ENST00000504120 RTTNQ86VV8 2226 aa13.52□□□□□ -0.25
PCDHA1-203ENST00000504120 CEP250Q9BV73 2442 aa13.52□□□□□ -0.25
PCDHA1-203ENST00000504120 GBF1Q92538 1859 aa13.52□□□□□ -0.25
PCDHA1-203ENST00000504120 FNDC10F2Z333 226 aa13.52□□□□□ -0.25
PCDHA1-203ENST00000504120 GHRHP01286 108 aa13.52□□□□□ -0.25
PCDHA1-203ENST00000504120 MALP21145 153 aa13.52□□□□□ -0.25
PCDHA1-203ENST00000504120 C9orf139Q6ZV77 190 aa13.52□□□□□ -0.25
PCDHA1-203ENST00000504120 TRGV4A0A0C4DH28 118 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 CD33P20138 364 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 LHFPL4Q7Z7J7 247 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 SIGLEC9Q9Y336 463 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 B4DSR2 109 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 AMBPP02760 352 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 LYPD1Q8N2G4 141 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 DERL1Q9BUN8 251 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 LAGE3Q14657 143 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 C15orf62A8K5M9 175 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 GZMBP10144 247 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 ZNF138P52744 262 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 C5orf24Q7Z6I8 188 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 ORAOV1Q8WV07 137 aa13.51□□□□□ -0.25
PCDHA1-203ENST00000504120 TMEM219Q86XT9 240 aa13.5□□□□□ -0.25
PCDHA1-203ENST00000504120 ZNF581Q9P0T4 197 aa13.5□□□□□ -0.25
PCDHA1-203ENST00000504120 SRD5A1P18405 259 aa13.5□□□□□ -0.25
PCDHA1-203ENST00000504120 PLNP26678 52 aa13.5□□□□□ -0.25
PCDHA1-203ENST00000504120 GLRX5Q86SX6 157 aa13.5□□□□□ -0.25
PCDHA1-203ENST00000504120 CACNA1DQ01668 2161 aa13.5□□□□□ -0.25
PCDHA1-203ENST00000504120 TANC1Q9C0D5 1861 aa13.5□□□□□ -0.25
PCDHA1-203ENST00000504120 ZNF815PA8K554 130 aa13.5□□□□□ -0.25
PCDHA1-203ENST00000504120 ITGB1BP1O14713 200 aa13.5□□□□□ -0.25
PCDHA1-203ENST00000504120 IGKV3D-20A0A0C4DH25 116 aa13.49□□□□□ -0.25
PCDHA1-203ENST00000504120 ZNF474Q6S9Z5 364 aaPredicted RBP13.49□□□□□ -0.25
PCDHA1-203ENST00000504120 TNFSF13O75888 250 aa13.49□□□□□ -0.25
PCDHA1-203ENST00000504120 KIR3DL3Q8N743 410 aa13.49□□□□□ -0.25
PCDHA1-203ENST00000504120 ETV2O00321 342 aaPredicted RBP13.49□□□□□ -0.25
PCDHA1-203ENST00000504120 HOXA3O43365 443 aaPredicted RBP13.49□□□□□ -0.25
PCDHA1-203ENST00000504120 SRSF8Q9BRL6 282 aaKnown RBP13.49□□□□□ -0.25
PCDHA1-203ENST00000504120 ERVK11-1P61568 191 aa13.49□□□□□ -0.25
PCDHA1-203ENST00000504120 LYZL1Q6UWQ5 148 aa13.49□□□□□ -0.25
PCDHA1-203ENST00000504120 HSD52Q0P140 79 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 ACTL10Q5JWF8 245 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 D6R8Y8 96 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 SEC11AP67812 179 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 BEND2Q8NDZ0 799 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 USMG5Q96IX5 58 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 LINC00477Q96M19 166 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 RFNGQ9Y644 331 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 TCF20Q9UGU0 1960 aaKnown RBP13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 PSG3Q16557 428 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 GTSCR1Q86UQ5 136 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 A0A1B0GV72 72 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 RNASE2P10153 161 aaKnown RBP13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 OR5A1Q8NGJ0 315 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 A0A0G2JRQ6 117 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 TOMM40O96008 361 aa13.48□□□□□ -0.25
PCDHA1-203ENST00000504120 H3BUX3 64 aa13.47□□□□□ -0.25
PCDHA1-203ENST00000504120 KLF17Q5JT82 389 aaPredicted RBP13.47□□□□□ -0.25
PCDHA1-203ENST00000504120 TMEM155Q4W5P6 130 aa13.47□□□□□ -0.25
PCDHA1-203ENST00000504120 OR9G4Q8NGQ1 327 aa13.47□□□□□ -0.25
PCDHA1-203ENST00000504120 WFDC12Q8WWY7 111 aa13.47□□□□□ -0.25
PCDHA1-203ENST00000504120 THADAQ6YHU6 1953 aa13.47□□□□□ -0.25
PCDHA1-203ENST00000504120 TRAV2A0A0B4J234 112 aa13.47□□□□□ -0.25
PCDHA1-203ENST00000504120 PAX2Q02962 417 aa13.46□□□□□ -0.25
PCDHA1-203ENST00000504120 Q6ZRM9 215 aa13.46□□□□□ -0.25
PCDHA1-203ENST00000504120 DTX2Q86UW9 622 aa13.46□□□□□ -0.25
PCDHA1-203ENST00000504120 NUP35Q8NFH5 326 aa13.46□□□□□ -0.25
PCDHA1-203ENST00000504120 FAM223BA6NKX1 122 aa13.46□□□□□ -0.25
PCDHA1-203ENST00000504120 SH2D1AO60880 128 aa13.46□□□□□ -0.25
PCDHA1-203ENST00000504120 FAM223AQ8IWN6 122 aa13.46□□□□□ -0.25
PCDHA1-203ENST00000504120 FNDC4Q9H6D8 234 aaPredicted RBP13.46□□□□□ -0.25
PCDHA1-203ENST00000504120 TMEM8BA6NDV4 472 aa13.46□□□□□ -0.26
PCDHA1-203ENST00000504120 ADARB2-AS1A8MUL3 147 aa13.46□□□□□ -0.26
PCDHA1-203ENST00000504120 SLC25A20O43772 301 aa13.46□□□□□ -0.26
PCDHA1-203ENST00000504120 COL4A6Q14031 1691 aa13.46□□□□□ -0.26
PCDHA1-203ENST00000504120 NCR2O95944 276 aa13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 GNLYP22749 145 aa13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 LCN12Q6JVE5 192 aa13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 LYPD2Q6UXB3 125 aa13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 CD300EQ496F6 205 aaPredicted RBP13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 RCHY1Q96PM5 261 aa13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 CHCHD5Q9BSY4 110 aa13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 COL8A2P25067 703 aa13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 LINC00469Q8N7U9 141 aa13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 SRRM4A7MD48 611 aaKnown RBP13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 SRSF6Q13247 344 aaKnown RBP13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 RPRMLQ8N4K4 120 aa13.45□□□□□ -0.26
PCDHA1-203ENST00000504120 LINC00205P59089 165 aa13.44□□□□□ -0.26
PCDHA1-203ENST00000504120 C11orf44Q8N8P7 122 aa13.44□□□□□ -0.26
PCDHA1-203ENST00000504120 DPH3P1Q9H4G8 78 aa13.44□□□□□ -0.26
PCDHA1-203ENST00000504120 PRTN3P24158 256 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms