RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 KIF26BQ2KJY2 2108 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 ERVH48-1M5A8F1 160 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 ITGB1BP1O14713 200 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 RAMP3O60896 148 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 TNFRSF6BO95407 300 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 IGKCP01834 107 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 CFHR3Q02985 330 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 OSTCQ9NRP0 149 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 CDK5RAP2Q96SN8 1893 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 GAGE12JA6NER3 117 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 FAM223BA6NKX1 122 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 GAGE1Q13065 139 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 GAGE4Q13068 117 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 GAGE5Q13069 117 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 LAGE3Q14657 143 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 GAGE13Q4V321 117 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 FAM223AQ8IWN6 122 aa5.91□□□□□ -1.46
UPF2-203ENST00000397053 MYMXA0A1B0GTQ4 84 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 LEPROTO15243 131 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 CD55P08174 381 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 FOXG1P55316 489 aaPredicted RBP5.9□□□□□ -1.46
UPF2-203ENST00000397053 FOXL1Q12952 345 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 C14orf178Q8N769 122 aaPredicted RBP5.9□□□□□ -1.46
UPF2-203ENST00000397053 SCRT1Q9BWW7 348 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 PIKFYVEQ9Y2I7 2098 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 LTBP4Q8N2S1 1624 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 TEX48A0A1B0GUV7 120 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 KNCNA6PVL3 124 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 F8VVB4 439 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 F8VWA3 439 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 RHODO00212 210 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 PRTN3P24158 256 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 EFNB3Q15768 340 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 EXOC3-AS1Q8N2X6 119 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 LY6G5BQ8NDX9 201 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 NABP1Q96AH0 204 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 CLDN16Q9Y5I7 305 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 DDX60Q8IY21 1712 aaKnown RBP5.9□□□□□ -1.46
UPF2-203ENST00000397053 ZNF831Q5JPB2 1677 aa5.9□□□□□ -1.46
UPF2-203ENST00000397053 NCR2O95944 276 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 WDR83OSQ9Y284 106 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 DOCK1Q14185 1865 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 MYOFQ9NZM1 2061 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 TRAV8-4A0A0B4J246 113 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 LINC01619G3V211 115 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 K7ENP7 123 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 SRP19P09132 144 aaKnown RBP5.9□□□□□ -1.47
UPF2-203ENST00000397053 COL8A2P25067 703 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 RBMY1FQ15415 496 aaKnown RBP5.9□□□□□ -1.47
UPF2-203ENST00000397053 LHFPL4Q7Z7J7 247 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 DERL1Q9BUN8 251 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 LIME1Q9H400 295 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 MAST2Q6P0Q8 1798 aa5.9□□□□□ -1.47
UPF2-203ENST00000397053 TMEM155Q4W5P6 130 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 NRXN3Q9Y4C0 1643 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 ADAMTSL3P82987 1691 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 A0A087WWL8 130 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 TRAV5A0A0B4J249 113 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 C22orf46C9J442 243 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 C1QTNF9P0C862 333 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 VWC2Q2TAL6 325 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 Q8TAT8 98 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 SMPXQ9UHP9 88 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 GAGE12BA1L429 117 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 A8MXK9 166 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 BUB1B-PAK6H3BSN5 160 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 GAGE7O76087 117 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 GAGE12FP0CL80 117 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 GAGE12GP0CL81 117 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 GAGE12IP0CL82 117 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 SLC25A48Q6ZT89 311 aaKnown RBP5.89□□□□□ -1.47
UPF2-203ENST00000397053 ZNF479Q96JC4 524 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 GGTLC1Q9BX51 225 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 MEGF9Q9H1U4 602 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 DKK4Q9UBT3 224 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 DDX60LQ5H9U9 1706 aaKnown RBP5.89□□□□□ -1.47
UPF2-203ENST00000397053 PIEZO1Q92508 2521 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 SERF1AO75920 110 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 TCRAP04437 139 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 TSKUQ8WUA8 353 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 CITED2Q99967 270 aaPredicted RBP5.89□□□□□ -1.47
UPF2-203ENST00000397053 CSTL1Q9H114 145 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 TRBV25-1A0A075B6N4 114 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 IGLV3-32A0A0A0MS00 114 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 A6NNC1 897 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 RPL23P62829 140 aaKnown RBP5.89□□□□□ -1.47
UPF2-203ENST00000397053 Q0VFX4 171 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 RUSC1-AS1Q66K80 236 aa5.89□□□□□ -1.47
UPF2-203ENST00000397053 DOCK2Q92608 1830 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 KIF13AQ9H1H9 1805 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 MALRD1Q5VYJ5 2156 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 FAM90A9PA6NNJ1 464 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 PSG3Q16557 428 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 TAL2Q16559 108 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 LINC01559Q495D7 138 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 OVOL2Q9BRP0 275 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 SHANK3Q9BYB0 1731 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 A0A1B0GV90 55 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 MMP23AO75900 390 aa5.88□□□□□ -1.47
UPF2-203ENST00000397053 CRYGSP22914 178 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms