RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 GTSCR1Q86UQ5 136 aa8.49□□□□□ -1.05
LIMCH1-203ENST00000396595 hDV102S1A0JD36 115 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 RHOGP84095 191 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 SLC25A48Q6ZT89 311 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 C8orf46Q8TAG6 207 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 K7EP34 96 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 CRPP02741 224 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 RBMY1FQ15415 496 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 KLF17Q5JT82 389 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 TMEM14EPQ6UXP3 125 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 CHD5Q8TDI0 1954 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 TAF1LQ8IZX4 1826 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 HAX1O00165 279 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 MYOD1P15172 320 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 RPP25LQ8N5L8 163 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 DPH3Q96FX2 82 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 AGMATQ9BSE5 352 aa8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 BRCA1P38398 1863 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-203ENST00000396595 NABP1Q96AH0 204 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 LY96Q9Y6Y9 160 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 SBF2Q86WG5 1849 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 RPUSD1Q9UJJ7 312 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 V9GYY9 64 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 C9orf118A6NHY6 69 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 CSRP2Q16527 193 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 FGFBP3Q8TAT2 258 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 ITLN2Q8WWU7 325 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 ABCA7Q8IZY2 2146 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 INTS1Q8N201 2190 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 CD7P09564 240 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 FOXF2Q12947 444 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 PLXNA1Q9UIW2 1896 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 DUSP14O95147 198 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 ZNF688P0C7X2 276 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 FAM90A2PQ658T7 463 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 WFDC12Q8WWY7 111 aa8.47□□□□□ -1.05
LIMCH1-203ENST00000396595 SRRM5B3KS81 715 aa8.46□□□□□ -1.05
LIMCH1-203ENST00000396595 ACTL10Q5JWF8 245 aa8.46□□□□□ -1.05
LIMCH1-203ENST00000396595 LINC01587Q99440 93 aa8.46□□□□□ -1.05
LIMCH1-203ENST00000396595 TET1Q8NFU7 2136 aa8.46□□□□□ -1.05
LIMCH1-203ENST00000396595 EFNA2O43921 213 aa8.46□□□□□ -1.06
LIMCH1-203ENST00000396595 CDK2AP2O75956 126 aa8.46□□□□□ -1.06
LIMCH1-203ENST00000396595 PF4P02776 101 aa8.46□□□□□ -1.06
LIMCH1-203ENST00000396595 UTF1Q5T230 341 aa8.46□□□□□ -1.06
LIMCH1-203ENST00000396595 PSME4Q14997 1843 aa8.46□□□□□ -1.06
LIMCH1-203ENST00000396595 INAFM2P0DMQ5 153 aa8.46□□□□□ -1.06
LIMCH1-203ENST00000396595 IGKV3D-20A0A0C4DH25 116 aa8.46□□□□□ -1.06
LIMCH1-203ENST00000396595 IGKV1-5P01602 117 aa8.46□□□□□ -1.06
LIMCH1-203ENST00000396595 IGHV2-70P01814 119 aa8.46□□□□□ -1.06
LIMCH1-203ENST00000396595 CHAC1Q9BUX1 264 aa8.46□□□□□ -1.06
LIMCH1-203ENST00000396595 GBF1Q92538 1859 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 TRAV41A0A0B4J266 112 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 IGHV3-11P01762 117 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 SPTBN1Q01082 2364 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 PDCD11Q14690 1871 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 IGKV1-27A0A075B6S5 117 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 TRBV6-6A0A0A6YYG2 114 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 IGHV1-18A0A0C4DH31 117 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 LYL1P12980 280 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 CSTL1Q9H114 145 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 TFF1P04155 84 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 TMEM86BQ8N661 226 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 FAM168AQ92567 244 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 C20orf144Q9BQM9 153 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 EP300Q09472 2414 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 C3orf79P0CE67 100 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 TCTEX1D4Q5JR98 221 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 ZNF625Q96I27 306 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 OVOL1O14753 267 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 SELLP14151 372 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 TMEM167AQ8TBQ9 72 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 RNASE6Q93091 150 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 PEMTQ9UBM1 199 aa8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 POLR3KQ9Y2Y1 108 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-203ENST00000396595 DOPEY2Q9Y3R5 2298 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 TRIOBPQ9H2D6 2365 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 SOCS3O14543 225 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 LTBRP36941 435 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 C7orf69Q9H7B7 122 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 GFRA3O60609 400 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 SYNJ2BPP57105 145 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 NPC2P61916 151 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 ZFP36L1Q07352 338 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 SPATA31B1PQ5VZV4 182 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 GREB1Q4ZG55 1949 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 NYNRINQ9P2P1 1898 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 TIMM23O14925 209 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 QRFPP83859 136 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 HGFACQ04756 655 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 TRGV2A0A075B6R0 118 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 SMAD7O15105 426 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 IGHV1-46P01743 117 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 PPIFP30405 207 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 TMEM42Q69YG0 159 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 GGNQ86UU5 652 aa8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 MRPL27Q9P0M9 148 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-203ENST00000396595 DUX4L9Q6RFH8 374 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 TMEM256Q8N2U0 113 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 BRK1Q8WUW1 75 aa8.43□□□□□ -1.06
LIMCH1-203ENST00000396595 TRGV9Q99603 122 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms