RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 LCNL1Q6ZST4 164 aa10.58□□□□□ -0.72
VAPB-202ENST00000395802 WIPF2Q8TF74 440 aaPredicted RBP10.58□□□□□ -0.72
VAPB-202ENST00000395802 NARS2Q96I59 477 aaKnown RBP10.58□□□□□ -0.72
VAPB-202ENST00000395802 PBDC1Q9BVG4 233 aa10.58□□□□□ -0.72
VAPB-202ENST00000395802 MAP1LC3BQ9GZQ8 125 aa10.58□□□□□ -0.72
VAPB-202ENST00000395802 TECRQ9NZ01 308 aaKnown RBP10.58□□□□□ -0.72
VAPB-202ENST00000395802 TMEM218A2RU14 115 aa10.57□□□□□ -0.72
VAPB-202ENST00000395802 ADCYAP1P18509 176 aa10.57□□□□□ -0.72
VAPB-202ENST00000395802 FAM106AQ4KMX7 169 aa10.57□□□□□ -0.72
VAPB-202ENST00000395802 KHDC3LQ587J8 217 aa10.57□□□□□ -0.72
VAPB-202ENST00000395802 LINC00305Q7Z4B0 112 aa10.57□□□□□ -0.72
VAPB-202ENST00000395802 C4orf3Q8WVX3 66 aa10.57□□□□□ -0.72
VAPB-202ENST00000395802 TMEM37Q8WXS4 190 aa10.57□□□□□ -0.72
VAPB-202ENST00000395802 RAB24Q969Q5 203 aa10.57□□□□□ -0.72
VAPB-202ENST00000395802 SEPSECSQ9HD40 501 aaKnown RBP10.57□□□□□ -0.72
VAPB-202ENST00000395802 TREM1Q9NP99 234 aa10.57□□□□□ -0.72
VAPB-202ENST00000395802 RABAC1Q9UI14 185 aa10.57□□□□□ -0.72
VAPB-202ENST00000395802 TSSC4Q9Y5U2 329 aaPredicted RBP10.57□□□□□ -0.72
VAPB-202ENST00000395802 NIPBLQ6KC79 2804 aaeCLIP10.57□□□□□ -0.72
VAPB-202ENST00000395802 C9JQL5 133 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 PPP5D1E7EU14 171 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 EIF3GO75821 320 aaKnown RBP eCLIP10.56□□□□□ -0.72
VAPB-202ENST00000395802 CXorf1O96002 111 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 HSPB1P04792 205 aaKnown RBP10.56□□□□□ -0.72
VAPB-202ENST00000395802 FGF8P55075 233 aaPredicted RBP10.56□□□□□ -0.72
VAPB-202ENST00000395802 PROK1P58294 105 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 RPEL1Q2QD12 228 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 PQLC2Q6ZP29 291 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 MRPL27Q9P0M9 148 aaKnown RBP10.56□□□□□ -0.72
VAPB-202ENST00000395802 DOK5Q9P104 306 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 STAG3L2P0CL84 134 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 STAG3L3P0CL85 134 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 C8orf88P0DMB2 117 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 PPT1P50897 306 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 TOMM20LQ6UXN7 152 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 GPHB5Q86YW7 130 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 METTL26Q96S19 204 aa10.56□□□□□ -0.72
VAPB-202ENST00000395802 EIF5A2Q9GZV4 153 aaKnown RBP10.56□□□□□ -0.72
VAPB-202ENST00000395802 RBFOX3A6NFN3 312 aa10.55□□□□□ -0.72
VAPB-202ENST00000395802 HMGB3O15347 200 aaKnown RBP10.55□□□□□ -0.72
VAPB-202ENST00000395802 C10orf91Q5T1B1 145 aa10.55□□□□□ -0.72
VAPB-202ENST00000395802 OR5B12Q96R08 314 aa10.55□□□□□ -0.72
VAPB-202ENST00000395802 RARRES2Q99969 163 aa10.55□□□□□ -0.72
VAPB-202ENST00000395802 IFNA1P01562 189 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 TAGLN2P37802 199 aaKnown RBP10.54□□□□□ -0.72
VAPB-202ENST00000395802 PSMB3P49720 205 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 PMS2P11Q13670 270 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 PEA15Q15121 130 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 DPF1Q92782 380 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 SLC25A39Q9BZJ4 359 aaPredicted RBP10.54□□□□□ -0.72
VAPB-202ENST00000395802 SMDT1Q9H4I9 107 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 SFTA3P0C7M3 94 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 NPPCP23582 126 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 BMI1P35226 326 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 USF2Q15853 346 aaPredicted RBP10.54□□□□□ -0.72
VAPB-202ENST00000395802 HAGHQ16775 308 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 TCTEX1D4Q5JR98 221 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 ZNF506Q5JVG8 444 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 PATE2Q6UY27 113 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 KLHL30-AS1Q8NEE0 82 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 C20orf24Q9BUV8 137 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 ZFAND3Q9H8U3 227 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 TMEM167BQ9NRX6 74 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 UFC1Q9Y3C8 167 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 C2CD3Q4AC94 2353 aa10.54□□□□□ -0.72
VAPB-202ENST00000395802 IGHV3-35A0A0C4DH35 117 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 LOC102723971A0A1B0GUV8 181 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 A0A1W2PS18 150 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 LINC01619G3V211 115 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 OR7C2O60412 319 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 TRBV12-3P01733 135 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 BCL2P10415 239 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 ICAM4Q14773 271 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 MIR17HGQ75NE6 70 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 CCDC28AQ8IWP9 274 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 TMEM190Q8WZ59 177 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 UHRF2Q96PU4 802 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 SHANK2-AS3Q9BTD1 123 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 SEC11CQ9BY50 192 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 GNG13Q9P2W3 67 aa10.53□□□□□ -0.72
VAPB-202ENST00000395802 CARHSP1Q9Y2V2 147 aaKnown RBP10.53□□□□□ -0.72
VAPB-202ENST00000395802 JMJD1CQ15652 2540 aa10.52□□□□□ -0.72
VAPB-202ENST00000395802 ZNF320A2RRD8 509 aa10.52□□□□□ -0.73
VAPB-202ENST00000395802 APOC3P02656 99 aa10.52□□□□□ -0.73
VAPB-202ENST00000395802 CD28P10747 220 aa10.52□□□□□ -0.73
VAPB-202ENST00000395802 C1orf194Q5T5A4 169 aa10.52□□□□□ -0.73
VAPB-202ENST00000395802 BPIFA4PQ86YQ2 179 aa10.52□□□□□ -0.73
VAPB-202ENST00000395802 GPR82Q96P67 336 aa10.52□□□□□ -0.73
VAPB-202ENST00000395802 TMPRSS5Q9H3S3 457 aa10.52□□□□□ -0.73
VAPB-202ENST00000395802 DAZ1Q9NQZ3 744 aaKnown RBP10.52□□□□□ -0.73
VAPB-202ENST00000395802 F8W036 122 aa10.51□□□□□ -0.73
VAPB-202ENST00000395802 H3BRN7 92 aa10.51□□□□□ -0.73
VAPB-202ENST00000395802 K7EMT4 169 aa10.51□□□□□ -0.73
VAPB-202ENST00000395802 ARL14EPLP0DKL9 152 aa10.51□□□□□ -0.73
VAPB-202ENST00000395802 RPL7P18124 248 aaKnown RBP10.51□□□□□ -0.73
VAPB-202ENST00000395802 IQCF2Q8IXL9 164 aa10.51□□□□□ -0.73
VAPB-202ENST00000395802 OR11H1Q8NG94 326 aa10.51□□□□□ -0.73
VAPB-202ENST00000395802 OR1N2Q8NGR9 330 aa10.51□□□□□ -0.73
VAPB-202ENST00000395802 GRAMD2BQ96HH9 432 aa10.51□□□□□ -0.73
VAPB-202ENST00000395802 OR51M1Q9H341 326 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms