RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TAS2R45P59539 299 aa9□□□□□ -0.97
CUX1-204ENST00000393824 SPRNQ5BIV9 151 aa9□□□□□ -0.97
CUX1-204ENST00000393824 ACP7Q6ZNF0 438 aa9□□□□□ -0.97
CUX1-204ENST00000393824 Q8TCH9 128 aa9□□□□□ -0.97
CUX1-204ENST00000393824 GCM1Q9NP62 436 aa9□□□□□ -0.97
CUX1-204ENST00000393824 IDI2-AS1Q9NZ38 188 aa9□□□□□ -0.97
CUX1-204ENST00000393824 DUSP13Q9UII6 198 aa9□□□□□ -0.97
CUX1-204ENST00000393824 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.99□□□□□ -0.97
CUX1-204ENST00000393824 FAM231BA6NCW3 169 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 GRPP07492 148 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 CEACAM3P40198 252 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 GPR12P47775 334 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 LINC00173Q6ZV60 143 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 SIGMAR1Q99720 223 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 SSBP4Q9BWG4 385 aaPredicted RBP8.99□□□□□ -0.97
CUX1-204ENST00000393824 CXXC4Q9H2H0 198 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 FASNP49327 2511 aaKnown RBP8.99□□□□□ -0.97
CUX1-204ENST00000393824 A0A1W2PPR1 153 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 SH2D7A6NKC9 451 aaPredicted RBP8.99□□□□□ -0.97
CUX1-204ENST00000393824 HIGD1CA8MV81 97 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 C15orf65H3BRN8 121 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 COX8AP10176 69 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 C2orf91Q6ZV80 131 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 C11orf53Q8IXP5 236 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 H1FXQ92522 213 aaKnown RBP8.99□□□□□ -0.97
CUX1-204ENST00000393824 PLPPR2Q96GM1 343 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 JPT1Q9UK76 154 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 POLQO75417 2590 aa8.99□□□□□ -0.97
CUX1-204ENST00000393824 TRAV3A0A0B4J244 114 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 C9orf118A6NHY6 69 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 DEFB108AA8MXU0 73 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 VWC2LB2RUY7 222 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 SHISA9B4DS77 424 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 H3BRM9 83 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 LIPFP07098 398 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 CEBPDP49716 269 aaPredicted RBP8.98□□□□□ -0.97
CUX1-204ENST00000393824 CKS1BP61024 79 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 C5orf64Q2M2E5 130 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 WDR82Q6UXN9 313 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 ZCCHC24Q8N2G6 241 aaKnown RBP8.98□□□□□ -0.97
CUX1-204ENST00000393824 MAP1LC3CQ9BXW4 147 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 SMIM17P0DL12 118 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 HIST1H1EP10412 219 aaKnown RBP8.98□□□□□ -0.97
CUX1-204ENST00000393824 LOXP28300 417 aaPredicted RBP8.98□□□□□ -0.97
CUX1-204ENST00000393824 CAMPP49913 170 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 ATP5IP56385 69 aaPredicted RBP8.98□□□□□ -0.97
CUX1-204ENST00000393824 CR1LQ2VPA4 569 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 TMEM97Q5BJF2 176 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 ZNF841Q6ZN19 808 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 SSX8Q7RTT4 187 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 OR13A1Q8NGR1 328 aa8.98□□□□□ -0.97
CUX1-204ENST00000393824 PTPN13Q12923 2485 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 K7EP34 96 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 SLC25A17O43808 307 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 C8orf88P0DMB2 117 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 SMAGPQ0VAQ4 97 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 LINC01545Q5VT33 79 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 FAM90A1Q86YD7 464 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 VKORC1L1Q8N0U8 176 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 ZNF479Q96JC4 524 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 SLC25A33Q9BSK2 321 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 TMEM140Q9NV12 185 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 TET2Q6N021 2002 aaPredicted RBP8.97□□□□□ -0.97
CUX1-204ENST00000393824 ABCA12Q86UK0 2595 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 IGHV3-43A0A0B4J1X8 118 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 C15orf61A6NNL5 157 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 IGHV3-43DP0DP04 118 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 HTR1DP28221 377 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 GLRXP35754 106 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 HSPE1P61604 102 aaKnown RBP8.97□□□□□ -0.97
CUX1-204ENST00000393824 HBBP68871 147 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 C3orf36Q3SXR2 165 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 MBNL2Q5VZF2 373 aaKnown RBP8.97□□□□□ -0.97
CUX1-204ENST00000393824 BPIFA4PQ86YQ2 179 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 LINC00479Q96M42 142 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 S1PR3Q99500 378 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 GTSF1LQ9H1H1 148 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 FNDC4Q9H6D8 234 aaPredicted RBP8.97□□□□□ -0.97
CUX1-204ENST00000393824 C7orf69Q9H7B7 122 aa8.97□□□□□ -0.97
CUX1-204ENST00000393824 SOX21Q9Y651 276 aaPredicted RBP8.97□□□□□ -0.97
CUX1-204ENST00000393824 E7EQL1 145 aa8.96□□□□□ -0.97
CUX1-204ENST00000393824 MZT1Q08AG7 82 aa8.96□□□□□ -0.97
CUX1-204ENST00000393824 ADIPOQQ15848 244 aa8.96□□□□□ -0.97
CUX1-204ENST00000393824 ZC2HC1AQ96GY0 325 aa8.96□□□□□ -0.97
CUX1-204ENST00000393824 AP1S3Q96PC3 154 aa8.96□□□□□ -0.97
CUX1-204ENST00000393824 FOXA2Q9Y261 457 aaPredicted RBP8.96□□□□□ -0.97
CUX1-204ENST00000393824 AMMECR1Q9Y4X0 333 aaPredicted RBP8.96□□□□□ -0.97
CUX1-204ENST00000393824 IGKV1OR2-108A0A075B7D4 117 aa8.96□□□□□ -0.98
CUX1-204ENST00000393824 WNT9BO14905 357 aa8.96□□□□□ -0.98
CUX1-204ENST00000393824 TIMM8AO60220 97 aaPredicted RBP8.96□□□□□ -0.98
CUX1-204ENST00000393824 DPF1Q92782 380 aa8.96□□□□□ -0.98
CUX1-204ENST00000393824 NDFIP1Q9BT67 221 aa8.96□□□□□ -0.98
CUX1-204ENST00000393824 MRPL32Q9BYC8 188 aaKnown RBP8.96□□□□□ -0.98
CUX1-204ENST00000393824 TMEM14BQ9NUH8 114 aa8.96□□□□□ -0.98
CUX1-204ENST00000393824 HSPB8Q9UJY1 196 aa8.96□□□□□ -0.98
CUX1-204ENST00000393824 ARFGEF3Q5TH69 2177 aa8.95□□□□□ -0.98
CUX1-204ENST00000393824 IGLV3-9A0A075B6K5 115 aa8.95□□□□□ -0.98
CUX1-204ENST00000393824 A6NDN8 102 aa8.95□□□□□ -0.98
CUX1-204ENST00000393824 F2RL2O00254 374 aa8.95□□□□□ -0.98
CUX1-204ENST00000393824 ASPHD1Q5U4P2 390 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms