RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 SSX2Q16385 188 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 LY6G5BQ8NDX9 201 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 OR1B1Q8NGR6 318 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 TRGV9Q99603 122 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 IGHV2-70DA0A0C4DH43 119 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 LY6LH3BQJ8 138 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 MGST1P10620 155 aaKnown RBP12.32□□□□□ -0.44
CCDC40-202ENST00000374876 LGALS4P56470 323 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 RUSC1-AS1Q66K80 236 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 TMEM116Q8NCL8 245 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 STXBP6Q8NFX7 210 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 IGF2BP2-AS1Q96M15 143 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 RNF5Q99942 180 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 RNASE7Q9H1E1 156 aaKnown RBP12.32□□□□□ -0.44
CCDC40-202ENST00000374876 OSTCQ9NRP0 149 aa12.32□□□□□ -0.44
CCDC40-202ENST00000374876 F11RQ9Y624 299 aaKnown RBP12.32□□□□□ -0.44
CCDC40-202ENST00000374876 NSD1Q96L73 2696 aaPredicted RBP12.31□□□□□ -0.44
CCDC40-202ENST00000374876 IGHV3-21A0A0B4J1V1 117 aa12.31□□□□□ -0.44
CCDC40-202ENST00000374876 TEX22C9J3V5 150 aa12.31□□□□□ -0.44
CCDC40-202ENST00000374876 GCGP01275 180 aa12.31□□□□□ -0.44
CCDC40-202ENST00000374876 TMEM18Q96B42 140 aa12.31□□□□□ -0.44
CCDC40-202ENST00000374876 FXYD5Q96DB9 178 aa12.31□□□□□ -0.44
CCDC40-202ENST00000374876 ISLRO14498 428 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 CBLN1P23435 193 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 HTR1DP28221 377 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 ADMP35318 185 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 TAS2R60P59551 318 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 ARF6P62330 175 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 TPTE2P1Q5T6R2 138 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 ZNF329Q86UD4 541 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 OR8I2Q8N0Y5 310 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 OR1L6Q8NGR2 347 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 SRSF12Q8WXF0 261 aaKnown RBP12.3□□□□□ -0.44
CCDC40-202ENST00000374876 CDC42EP3Q9UKI2 254 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 PLXNB1O43157 2135 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 TIMM23O14925 209 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 IGLV2-8P01709 118 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 RPL19P84098 196 aaKnown RBP12.3□□□□□ -0.44
CCDC40-202ENST00000374876 PAX8Q06710 450 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 JOSD1Q15040 202 aaPredicted RBP12.3□□□□□ -0.44
CCDC40-202ENST00000374876 IBA57Q5T440 356 aaKnown RBP12.3□□□□□ -0.44
CCDC40-202ENST00000374876 PRDM13Q9H4Q3 707 aa12.3□□□□□ -0.44
CCDC40-202ENST00000374876 ANK3Q12955 4377 aaKnown RBP12.29□□□□□ -0.44
CCDC40-202ENST00000374876 FCN1O00602 326 aa12.29□□□□□ -0.44
CCDC40-202ENST00000374876 HYPMO75409 117 aa12.29□□□□□ -0.44
CCDC40-202ENST00000374876 CNIH1O95406 144 aa12.29□□□□□ -0.44
CCDC40-202ENST00000374876 GATA3P23771 443 aa12.29□□□□□ -0.44
CCDC40-202ENST00000374876 FXYD3Q14802 87 aa12.29□□□□□ -0.44
CCDC40-202ENST00000374876 OR5R1Q8NH85 324 aa12.29□□□□□ -0.44
CCDC40-202ENST00000374876 MRPL18Q9H0U6 180 aaKnown RBP12.29□□□□□ -0.44
CCDC40-202ENST00000374876 NIPBLQ6KC79 2804 aaeCLIP12.28□□□□□ -0.44
CCDC40-202ENST00000374876 PEX7O00628 323 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 IER3P46695 156 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 MMDQ15546 238 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 GBGT1Q8N5D6 347 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 LINC00479Q96M42 142 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 TMEM160Q9NX00 188 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 DPM3Q9P2X0 92 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 CUBNO60494 3623 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 SETD2Q9BYW2 2564 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-202ENST00000374876 SNRPCP09234 159 aaKnown RBP12.28□□□□□ -0.44
CCDC40-202ENST00000374876 CEACAM3P40198 252 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 RANP62826 216 aaKnown RBP12.28□□□□□ -0.44
CCDC40-202ENST00000374876 NHLRC2Q8NBF2 726 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 OR11H6Q8NGC7 330 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 SERTAD4Q9NUC0 356 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 HILPDAQ9Y5L2 63 aa12.28□□□□□ -0.44
CCDC40-202ENST00000374876 TRBV9A0A0B4J1U6 114 aa12.27□□□□□ -0.44
CCDC40-202ENST00000374876 J3QLI3 93 aa12.27□□□□□ -0.44
CCDC40-202ENST00000374876 M0R1W7 72 aa12.27□□□□□ -0.44
CCDC40-202ENST00000374876 CRLF1O75462 422 aa12.27□□□□□ -0.44
CCDC40-202ENST00000374876 GZMBP10144 247 aa12.27□□□□□ -0.44
CCDC40-202ENST00000374876 LDLRAD2Q5SZI1 272 aa12.27□□□□□ -0.44
CCDC40-202ENST00000374876 BLNKQ8WV28 456 aa12.27□□□□□ -0.44
CCDC40-202ENST00000374876 SNURFLB1AK76 121 aa12.27□□□□□ -0.45
CCDC40-202ENST00000374876 CX3CL1P78423 397 aa12.27□□□□□ -0.45
CCDC40-202ENST00000374876 C9orf152Q5JTZ5 239 aa12.27□□□□□ -0.45
CCDC40-202ENST00000374876 BAGE2Q86Y30 109 aa12.27□□□□□ -0.45
CCDC40-202ENST00000374876 TMEM256Q8N2U0 113 aa12.27□□□□□ -0.45
CCDC40-202ENST00000374876 SRSF8Q9BRL6 282 aaKnown RBP12.27□□□□□ -0.45
CCDC40-202ENST00000374876 IGHV3OR16-10A0A075B7F0 116 aa12.26□□□□□ -0.45
CCDC40-202ENST00000374876 GRIFINA4D1Z8 144 aa12.26□□□□□ -0.45
CCDC40-202ENST00000374876 ZNF705GA8MUZ8 300 aaPredicted RBP12.26□□□□□ -0.45
CCDC40-202ENST00000374876 TCL1AP56279 114 aa12.26□□□□□ -0.45
CCDC40-202ENST00000374876 LHFPL4Q7Z7J7 247 aa12.26□□□□□ -0.45
CCDC40-202ENST00000374876 GNB1LQ9BYB4 327 aa12.26□□□□□ -0.45
CCDC40-202ENST00000374876 WNT10AQ9GZT5 417 aa12.26□□□□□ -0.45
CCDC40-202ENST00000374876 TRAV34A0A0B4J273 112 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 A0A1B0GUS0 222 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 NBR2O15453 112 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 SPINK4O60575 86 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 TOX4O94842 621 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 SLC25A5P05141 298 aaKnown RBP12.25□□□□□ -0.45
CCDC40-202ENST00000374876 NBEAP1P0C6P0 100 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 MYCNOSP40205 109 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 PLP1P60201 277 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 PKIAP61925 76 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 KLRD1Q13241 179 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 WDR73Q6P4I2 378 aa12.25□□□□□ -0.45
CCDC40-202ENST00000374876 SMIM27A0A1W2PRY6 76 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms