RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 TIMM8BQ9Y5J9 83 aaPredicted RBP13.09□□□□□ -0.31
SDC4-201ENST00000372733 SOX21Q9Y651 276 aaPredicted RBP13.09□□□□□ -0.31
SDC4-201ENST00000372733 M0R296 226 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 VAMP3Q15836 100 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 OR4C5Q8NGB2 326 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 TNFRSF1AP19438 455 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 CNTFRP26992 372 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 CEACAM8P31997 349 aaPredicted RBP13.09□□□□□ -0.31
SDC4-201ENST00000372733 PMCHL2Q9BQD1 86 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 LAMA5O15230 3695 aa13.09□□□□□ -0.31
SDC4-201ENST00000372733 ABCA1O95477 2261 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 NUDT3O95989 172 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 CSN3P07498 182 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 COL8A1P27658 744 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 ETFRF1Q6IPR1 90 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 C22orf15Q8WYQ4 148 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 ASCL2Q99929 193 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 CEP250Q9BV73 2442 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 SPAARA0A1B0GVQ0 90 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 C17orf100A8MU93 164 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 DLX1P56177 255 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 PRB3Q04118 309 aaPredicted RBP13.08□□□□□ -0.32
SDC4-201ENST00000372733 SLC25A34Q6PIV7 304 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 TMEM191AQ9H0A3 160 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 CTSZQ9UBR2 303 aa13.08□□□□□ -0.32
SDC4-201ENST00000372733 K7EP13 123 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 LYZP61626 148 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 ADIPOQQ15848 244 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 LRRC10Q5BKY1 277 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 FAM71F2Q6NXP2 309 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 PRNTQ86SH4 94 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 EXOC3-AS1Q8N2X6 119 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 ZADH2Q8N4Q0 377 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 CCL17Q92583 94 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 PKDREJQ9NTG1 2253 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 CACNA1HO95180 2353 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 PPIAL4EA0A075B759 164 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 PPIAL4DF5H284 164 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 TAX1BP3O14907 124 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 PPIAL4FP0DN26 164 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 RPL27AP46776 148 aaKnown RBP13.07□□□□□ -0.32
SDC4-201ENST00000372733 BVES-AS1Q5T3Y7 98 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 GOLT1AQ6ZVE7 132 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 WFDC8Q8IUA0 241 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 LINC00311Q8N616 119 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 GFRA4Q9GZZ7 299 aa13.07□□□□□ -0.32
SDC4-201ENST00000372733 MUC21A0A0G2JKD1 596 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 MUC21A0A140T8X8 626 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 LIPFP07098 398 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 MUC21Q5SSG8 566 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 TMEM116Q8NCL8 245 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 DEFB124Q8NES8 71 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 TMUB1Q9BVT8 246 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 HSBP1L1C9JCN9 74 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 NPIPB6E9PJ23 425 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 NDUFB3O43676 98 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 APOHP02749 345 aaPredicted RBP13.06□□□□□ -0.32
SDC4-201ENST00000372733 LOXP28300 417 aaPredicted RBP13.06□□□□□ -0.32
SDC4-201ENST00000372733 NUP37Q8NFH4 326 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 MAP1LC3CQ9BXW4 147 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 HIGD1AQ9Y241 93 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 DMXL1Q9Y485 3027 aa13.06□□□□□ -0.32
SDC4-201ENST00000372733 TMEM178BH3BS89 294 aa13.05□□□□□ -0.32
SDC4-201ENST00000372733 C8orf46Q8TAG6 207 aa13.05□□□□□ -0.32
SDC4-201ENST00000372733 NDFIP1Q9BT67 221 aa13.05□□□□□ -0.32
SDC4-201ENST00000372733 SCRT2Q9NQ03 307 aa13.05□□□□□ -0.32
SDC4-201ENST00000372733 MAP1BP46821 2468 aaKnown RBP13.05□□□□□ -0.32
SDC4-201ENST00000372733 OR2T8A6NH00 312 aa13.05□□□□□ -0.32
SDC4-201ENST00000372733 IGLV2-11P01706 119 aa13.05□□□□□ -0.32
SDC4-201ENST00000372733 FTH1P19P0C7X4 201 aa13.05□□□□□ -0.32
SDC4-201ENST00000372733 HTR1DP28221 377 aa13.05□□□□□ -0.32
SDC4-201ENST00000372733 DLX6P56179 175 aa13.05□□□□□ -0.32
SDC4-201ENST00000372733 PVRIGQ6DKI7 326 aa13.05□□□□□ -0.32
SDC4-201ENST00000372733 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.04□□□□□ -0.32
SDC4-201ENST00000372733 OVOL3O00110 214 aa13.04□□□□□ -0.32
SDC4-201ENST00000372733 TMEM108Q6UXF1 575 aa13.04□□□□□ -0.32
SDC4-201ENST00000372733 OTORQ9NRC9 128 aa13.04□□□□□ -0.32
SDC4-201ENST00000372733 MGAQ8IWI9 3026 aa13.04□□□□□ -0.32
SDC4-201ENST00000372733 CBY3A6NI87 242 aa13.04□□□□□ -0.32
SDC4-201ENST00000372733 ARMS2P0C7Q2 107 aa13.04□□□□□ -0.32
SDC4-201ENST00000372733 PSG1P11464 419 aa13.04□□□□□ -0.32
SDC4-201ENST00000372733 MC5RP33032 325 aa13.04□□□□□ -0.32
SDC4-201ENST00000372733 DMXL2Q8TDJ6 3036 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 TRAV30A0A087WSZ9 112 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 ZNF785A8K8V0 405 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 HAX1O00165 279 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 CEACAM4O75871 244 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 LGALS7P47929 136 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 RNF151Q2KHN1 245 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 PET117Q6UWS5 81 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 C8orf31Q8N9H6 132 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 A0A087X0K7 114 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 OR5AL1P0C617 328 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 PLP1P60201 277 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 FOXE3Q13461 319 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 ZC2HC1AQ96GY0 325 aa13.03□□□□□ -0.32
SDC4-201ENST00000372733 SLC25A39Q9BZJ4 359 aaPredicted RBP13.03□□□□□ -0.32
SDC4-201ENST00000372733 FAM231BA6NCW3 169 aa13.02□□□□□ -0.32
SDC4-201ENST00000372733 IGHV1-8P0DP01 117 aa13.02□□□□□ -0.32
SDC4-201ENST00000372733 BSPH1Q075Z2 132 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms