RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 HSPB9Q9BQS6 159 aa17.29■□□□□ 0.36
SHMT1-202ENST00000352886 Q9H3A6 140 aa17.29■□□□□ 0.36
SHMT1-202ENST00000352886 CFHR4Q92496 578 aa17.28■□□□□ 0.36
SHMT1-202ENST00000352886 GPR82Q96P67 336 aa17.28■□□□□ 0.36
SHMT1-202ENST00000352886 SRSF8Q9BRL6 282 aaKnown RBP17.28■□□□□ 0.36
SHMT1-202ENST00000352886 POLR3KQ9Y2Y1 108 aaPredicted RBP17.28■□□□□ 0.36
SHMT1-202ENST00000352886 HIST1H1EP10412 219 aaKnown RBP17.28■□□□□ 0.36
SHMT1-202ENST00000352886 SRIP30626 198 aa17.28■□□□□ 0.36
SHMT1-202ENST00000352886 OR10J3Q5JRS4 329 aa17.28■□□□□ 0.36
SHMT1-202ENST00000352886 NUP35Q8NFH5 326 aa17.28■□□□□ 0.36
SHMT1-202ENST00000352886 FAM103A1Q9BTL3 118 aaKnown RBP17.28■□□□□ 0.36
SHMT1-202ENST00000352886 LOC105371242A0A075B767 164 aa17.27■□□□□ 0.36
SHMT1-202ENST00000352886 SLC25A39Q9BZJ4 359 aaPredicted RBP17.27■□□□□ 0.36
SHMT1-202ENST00000352886 A0A1W2PRD5 423 aa17.27■□□□□ 0.35
SHMT1-202ENST00000352886 A0A1W2PRF3 423 aa17.27■□□□□ 0.35
SHMT1-202ENST00000352886 A0A1W2PRM7 423 aa17.27■□□□□ 0.35
SHMT1-202ENST00000352886 ZNF705FA8MVS1 300 aaPredicted RBP17.27■□□□□ 0.35
SHMT1-202ENST00000352886 APCSP02743 223 aa17.27■□□□□ 0.35
SHMT1-202ENST00000352886 ZNF705DP0CH99 300 aaPredicted RBP17.27■□□□□ 0.35
SHMT1-202ENST00000352886 ZNF705BP0CI00 300 aaPredicted RBP17.27■□□□□ 0.35
SHMT1-202ENST00000352886 CEACAM3P40198 252 aa17.27■□□□□ 0.35
SHMT1-202ENST00000352886 CHRDL1Q9BU40 450 aa17.27■□□□□ 0.35
SHMT1-202ENST00000352886 COL6A6A6NMZ7 2263 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 K7EIM0 57 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 ZNF253O75346 499 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 IGKV1-17P01599 117 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 TCRAP04437 139 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 BRS3P32247 399 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 SMIM12Q96EX1 92 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 TBX15Q96SF7 602 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 M0R1W7 72 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 SLAQ13239 276 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 TSKUQ8WUA8 353 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 NEU4Q8WWR8 484 aaPredicted RBP17.26■□□□□ 0.35
SHMT1-202ENST00000352886 FMC1Q96HJ9 113 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 RCHY1Q96PM5 261 aa17.26■□□□□ 0.35
SHMT1-202ENST00000352886 WIPF2Q8TF74 440 aaPredicted RBP17.25■□□□□ 0.35
SHMT1-202ENST00000352886 MLST8Q9BVC4 326 aa17.25■□□□□ 0.35
SHMT1-202ENST00000352886 HIGD1CA8MV81 97 aa17.25■□□□□ 0.35
SHMT1-202ENST00000352886 ODF3BA8MYP8 253 aa17.25■□□□□ 0.35
SHMT1-202ENST00000352886 TOMM40O96008 361 aa17.25■□□□□ 0.35
SHMT1-202ENST00000352886 HES1Q14469 280 aa17.25■□□□□ 0.35
SHMT1-202ENST00000352886 FBLN7Q53RD9 439 aa17.25■□□□□ 0.35
SHMT1-202ENST00000352886 RASL11AQ6T310 242 aa17.25■□□□□ 0.35
SHMT1-202ENST00000352886 TOMM20LQ6UXN7 152 aa17.25■□□□□ 0.35
SHMT1-202ENST00000352886 ZNF586Q9NXT0 402 aa17.25■□□□□ 0.35
SHMT1-202ENST00000352886 NDUFA3O95167 84 aa17.24■□□□□ 0.35
SHMT1-202ENST00000352886 PRTN3P24158 256 aa17.24■□□□□ 0.35
SHMT1-202ENST00000352886 CDKN1AP38936 164 aa17.24■□□□□ 0.35
SHMT1-202ENST00000352886 SIGLECL1Q8N7X8 197 aa17.24■□□□□ 0.35
SHMT1-202ENST00000352886 MRPL27Q9P0M9 148 aaKnown RBP17.24■□□□□ 0.35
SHMT1-202ENST00000352886 CSMD1Q96PZ7 3565 aa17.24■□□□□ 0.35
SHMT1-202ENST00000352886 LTAP01374 205 aa17.23■□□□□ 0.35
SHMT1-202ENST00000352886 GPX1P07203 203 aa17.23■□□□□ 0.35
SHMT1-202ENST00000352886 C1orf194Q5T5A4 169 aa17.23■□□□□ 0.35
SHMT1-202ENST00000352886 LINC00322Q6ZN03 302 aaPredicted RBP17.23■□□□□ 0.35
SHMT1-202ENST00000352886 NPBQ8NG41 125 aa17.23■□□□□ 0.35
SHMT1-202ENST00000352886 TMEM14CQ9P0S9 112 aa17.23■□□□□ 0.35
SHMT1-202ENST00000352886 C21orf62-AS1Q17RA5 79 aa17.23■□□□□ 0.35
SHMT1-202ENST00000352886 SNHG12Q9BXW3 62 aa17.23■□□□□ 0.35
SHMT1-202ENST00000352886 GDF5OSQ5U4N7 250 aa17.22■□□□□ 0.35
SHMT1-202ENST00000352886 KCNS1Q96KK3 526 aa17.22■□□□□ 0.35
SHMT1-202ENST00000352886 OTORQ9NRC9 128 aa17.22■□□□□ 0.35
SHMT1-202ENST00000352886 KLF17Q5JT82 389 aaPredicted RBP17.22■□□□□ 0.35
SHMT1-202ENST00000352886 NHLH1Q02575 133 aa17.21■□□□□ 0.35
SHMT1-202ENST00000352886 EXOC3-AS1Q8N2X6 119 aa17.21■□□□□ 0.35
SHMT1-202ENST00000352886 TBL2Q9Y4P3 447 aaKnown RBP17.21■□□□□ 0.35
SHMT1-202ENST00000352886 KIR2DL5BA0A0G2JN68 375 aa17.21■□□□□ 0.35
SHMT1-202ENST00000352886 KIR2DL5BA0A0G2JPC4 375 aa17.21■□□□□ 0.35
SHMT1-202ENST00000352886 A0A1W2PS18 150 aa17.21■□□□□ 0.35
SHMT1-202ENST00000352886 VWC2LB2RUY7 222 aa17.21■□□□□ 0.35
SHMT1-202ENST00000352886 AMTP48728 403 aa17.21■□□□□ 0.35
SHMT1-202ENST00000352886 C5orf64Q2M2E5 130 aa17.21■□□□□ 0.35
SHMT1-202ENST00000352886 KIR2DL5AQ8N109 375 aa17.21■□□□□ 0.35
SHMT1-202ENST00000352886 RPP21Q9H633 154 aaKnown RBP17.21■□□□□ 0.35
SHMT1-202ENST00000352886 TOX4O94842 621 aa17.2■□□□□ 0.34
SHMT1-202ENST00000352886 GPR6P46095 362 aaPredicted RBP17.2■□□□□ 0.34
SHMT1-202ENST00000352886 RNF114Q9Y508 228 aa17.2■□□□□ 0.34
SHMT1-202ENST00000352886 S4R3C0 116 aa17.2■□□□□ 0.34
SHMT1-202ENST00000352886 SPTBN1Q01082 2364 aaKnown RBP17.2■□□□□ 0.34
SHMT1-202ENST00000352886 TRAV8-1A0A0A6YYK1 113 aa17.2■□□□□ 0.34
SHMT1-202ENST00000352886 A6NNC1 897 aa17.2■□□□□ 0.34
SHMT1-202ENST00000352886 PMCHP20382 165 aa17.2■□□□□ 0.34
SHMT1-202ENST00000352886 CAMPP49913 170 aa17.2■□□□□ 0.34
SHMT1-202ENST00000352886 TCF24Q7RTU0 167 aa17.2■□□□□ 0.34
SHMT1-202ENST00000352886 FBXL7Q9UJT9 491 aa17.2■□□□□ 0.34
SHMT1-202ENST00000352886 WNK2Q9Y3S1 2297 aa17.19■□□□□ 0.34
SHMT1-202ENST00000352886 VMO1Q7Z5L0 202 aa17.19■□□□□ 0.34
SHMT1-202ENST00000352886 VN1R17PQ8TDU5 208 aa17.19■□□□□ 0.34
SHMT1-202ENST00000352886 SHANK2-AS3Q9BTD1 123 aa17.19■□□□□ 0.34
SHMT1-202ENST00000352886 PRSS22Q9GZN4 317 aa17.19■□□□□ 0.34
SHMT1-202ENST00000352886 C19orf71A6NCJ1 209 aa17.19■□□□□ 0.34
SHMT1-202ENST00000352886 P01737 135 aa17.19■□□□□ 0.34
SHMT1-202ENST00000352886 RAB4AP20338 218 aa17.19■□□□□ 0.34
SHMT1-202ENST00000352886 TDRG1Q3Y452 100 aa17.19■□□□□ 0.34
SHMT1-202ENST00000352886 Q86TA4 180 aa17.19■□□□□ 0.34
SHMT1-202ENST00000352886 C18orf32Q8TCD1 76 aa17.19■□□□□ 0.34
SHMT1-202ENST00000352886 SSBP4Q9BWG4 385 aaPredicted RBP17.19■□□□□ 0.34
SHMT1-202ENST00000352886 ZNF25P17030 456 aaPredicted RBP17.18■□□□□ 0.34
SHMT1-202ENST00000352886 TEX43Q6ZNM6 134 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms