RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 COLCA2A8K830 154 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 PMS2P5A8MQ11 134 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 NPIPB5A8MRT5 1133 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 FFAR4Q5NUL3 377 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 OR51G1Q8NGK1 321 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 EEF1AKMT3Q96AZ1 226 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 NPVFQ9HCQ7 196 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 CACFD1Q9UGQ2 172 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 IGHV4OR15-8A0A075B7B6 117 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 A0A087WW49 117 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 PSG1P11464 419 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 RAB5CP51148 216 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 AWAT1Q58HT5 328 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 LCN15Q6UWW0 184 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 UNQ9165/PRO28630Q6UXU0 137 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 OR4X1Q8NH49 305 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 FAM213BQ8TBF2 198 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 MGST2Q99735 147 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 SMDT1Q9H4I9 107 aa7.13□□□□□ -1.27
USP4-202ENST00000351842 PSMB8P28062 276 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 KRTAP10-3P60369 221 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 RPL15P61313 204 aaKnown RBP7.12□□□□□ -1.27
USP4-202ENST00000351842 STPG3Q8N7X2 389 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 NPCDR1Q9BY65 106 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 CLDN34H7C241 214 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 IGHG4P01861 327 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 CRYGCP07315 174 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 ADMP35318 185 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 KIAA0141Q14154 515 aaPredicted RBP7.12□□□□□ -1.27
USP4-202ENST00000351842 ZNF266Q14584 549 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 WFDC3Q8IUB2 231 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 GBGT1Q8N5D6 347 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 C15orf54Q8N8G6 183 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 PXMP4Q9Y6I8 212 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 C9JQL5 133 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 DFFBO76075 338 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 PF4P02776 101 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 OR10J4P0C629 311 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 SFTA3P0C7M3 94 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 TAS2R30P59541 319 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 RAB31Q13636 194 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 LBHQ53QV2 105 aaPredicted RBP7.12□□□□□ -1.27
USP4-202ENST00000351842 TM4SF20Q53R12 229 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 SPATA31B1PQ5VZV4 182 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 C12orf54Q6X4T0 127 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 RNASEH2CQ8TDP1 164 aaKnown RBP7.12□□□□□ -1.27
USP4-202ENST00000351842 MDFIQ99750 246 aa7.12□□□□□ -1.27
USP4-202ENST00000351842 TRAV5A0A0B4J249 113 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 IGKV1-17P01599 117 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 FCGR2BP31994 310 aaPredicted RBP7.11□□□□□ -1.27
USP4-202ENST00000351842 NUTF2P61970 127 aaKnown RBP7.11□□□□□ -1.27
USP4-202ENST00000351842 WDR61Q9GZS3 305 aaKnown RBP7.11□□□□□ -1.27
USP4-202ENST00000351842 TMPRSS5Q9H3S3 457 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 A0A0G2JLM5 398 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 CORTO00230 105 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 CTSGP08311 255 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 PPT1P50897 306 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 PROK1P58294 105 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 AKR1C8PQ5T2L2 129 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 FAM78BQ5VT40 261 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 ETFRF1Q6IPR1 90 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 Q6ZRG5 221 aa7.11□□□□□ -1.27
USP4-202ENST00000351842 COX7A2P2O60397 106 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 IGLC1P0CG04 106 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 DDTP30046 118 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 CEBPGP53567 150 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 GGTLC1Q9BX51 225 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 PEF1Q9UBV8 284 aaKnown RBP7.1□□□□□ -1.27
USP4-202ENST00000351842 AGRNO00468 2067 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 TGOLN2O43493 480 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 OR7C2O60412 319 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 IGLV1-40P01703 118 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 HOXD3P31249 432 aaPredicted RBP7.1□□□□□ -1.27
USP4-202ENST00000351842 FOXL1Q12952 345 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 CDPF1Q6NVV7 123 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 ZNF491Q8N8L2 437 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 SPATA3Q8NHX4 192 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 BLNKQ8WV28 456 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 YPEL4Q96NS1 127 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 HRH4Q9H3N8 390 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 TREM1Q9NP99 234 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 PRSS46E5RG02 174 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 F8W735 103 aaPredicted RBP7.1□□□□□ -1.27
USP4-202ENST00000351842 APOHP02749 345 aaPredicted RBP7.1□□□□□ -1.27
USP4-202ENST00000351842 BSXQ3C1V8 233 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 MORN5Q5VZ52 161 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 IGFL4Q6B9Z1 124 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 TMEM144Q7Z5S9 345 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 ZNF502Q8TBZ5 544 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 ATG101Q9BSB4 218 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 SEPSECSQ9HD40 501 aaKnown RBP7.1□□□□□ -1.27
USP4-202ENST00000351842 SMCO4Q9NRQ5 59 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 RPH3ALQ9UNE2 315 aa7.1□□□□□ -1.27
USP4-202ENST00000351842 CHTOPQ9Y3Y2 248 aaKnown RBP7.1□□□□□ -1.27
USP4-202ENST00000351842 A0A1W2PPV4 95 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 BMPR1BO00238 502 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 HIST1H1BP16401 226 aaKnown RBP7.09□□□□□ -1.27
USP4-202ENST00000351842 UBE2G2P60604 165 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 DLK1P80370 383 aa7.09□□□□□ -1.27
USP4-202ENST00000351842 CYP2G1PQ6ZSU1 146 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms